CAZyme3D

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Entry ID

Information for CAZyme ID: BAS83399.1

Basic Information

GenBank IDBAS83399.1
FamilyGT4
Sequence Length415
UniProt IDQ84QB1(100,100)Download
Average pLDDT?91.08
CAZy50 ID58334
CAZy50 RepNo, BBN01770.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39947
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/Q84QB1.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGQQAAEAQP  LLLQGDQVDA  EWGCRPHRIV  LFVEPSPFAY  ISGYKNRFQN  FIKHLREMGD60
EMLVVTTHKG  APEEFHGAKV  IGSWSFPCPL  YQNVPLSLAL  SPRIFSAVAK  FKPDIIHATS120
PGVMVFGARF  IAKMLSVPMV  MSYHTHLPAY  IPRYNLNWLL  GPTWSLIRCL  HRSADLTLVP180
SVAIAEDFET  AKVVSANRVR  LWNKGVDSES  FHPKFRKHEM  RIKLSGGEPE  KPLIIHVGRF240
GREKNLDFLK  RVMERLPGVR  IAFVGDGPYR  AELERMFTGM  PAVFTGMLQG  EELSQAYASG300
DLFAMPSESE  TLGQVVLESM  ASGVPVVAAR  AGGIPDIIPK  DKEGKTSFLF  TPGDLDECVR360
KIEQLLSSKV  LRESIGRAAR  EEMEKCDWRA  ASKTIRNEHY  CTATLYWRKK  MGRTN415

Predicted 3D structure by AlphaFold2 with pLDDT = 91.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(228-375)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help