CAZyme3D

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Entry ID

Information for CAZyme ID: BAS74024.1

Basic Information

GenBank IDBAS74024.1
FamilyCBM45, GH13_6
Sequence Length438
UniProt IDA0A0P0V7G8(100,100)Download
Average pLDDT?66.15
CAZy50 ID24452
CAZy50 RepNo, CAW95492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39947
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

LLSLVSIIFC  REWDQPPSDM  RPPGSVPIKD  YAIETSLDTP  HNSEGKTIHE  VQIKIDKGTS60
IAAINFVLKE  EETGAWFQHK  GQDFRIPLSG  SFGGDLLGTE  QDIDVRPGAL  GHLSNVLQKP120
EGPIAEPHKT  VPDDKGSRTK  HISGFYEEYP  ILKTVYVQNF  ITVNVRENNG  TTKHAVEFDT180
DIPGEVIIHW  GVCKDNTMTW  EIPPEPHPPA  TKIFRQKALQ  TMLQQKADGT  GNSLSFLLDG240
EYSGLIFVVK  LDEYTWLRNV  ENGFDFYIPL  TRADAEADKQ  KADDKSSQDD  GLISDIRNLV300
VGLSSRRGQR  AKNKVLQEDI  LQEIERLAAE  AYSIFRSPTI  DTVEESVYID  DSSIVKPACS360
GTGSGFEILC  QGFNWESHKS  GKWYVELGSK  AKELSSMGFT  IVWSPPPTDS  VSPEGYMPRD420
LYNLNSRYIS  VCTIIVLL438

Predicted 3D structure by AlphaFold2 with pLDDT = 66.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM45(11-84)+CBM45(188-264)

LLSLVSIIFC  REWDQPPSDM  RPPGSVPIKD  YAIETSLDTP  HNSEGKTIHE  VQIKIDKGTS60
IAAINFVLKE  EETGAWFQHK  GQDFRIPLSG  SFGGDLLGTE  QDIDVRPGAL  GHLSNVLQKP120
EGPIAEPHKT  VPDDKGSRTK  HISGFYEEYP  ILKTVYVQNF  ITVNVRENNG  TTKHAVEFDT180
DIPGEVIIHW  GVCKDNTMTW  EIPPEPHPPA  TKIFRQKALQ  TMLQQKADGT  GNSLSFLLDG240
EYSGLIFVVK  LDEYTWLRNV  ENGFDFYIPL  TRADAEADKQ  KADDKSSQDD  GLISDIRNLV300
VGLSSRRGQR  AKNKVLQEDI  LQEIERLAAE  AYSIFRSPTI  DTVEESVYID  DSSIVKPACS360
GTGSGFEILC  QGFNWESHKS  GKWYVELGSK  AKELSSMGFT  IVWSPPPTDS  VSPEGYMPRD420
LYNLNSRYIS  VCTIIVLL438

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help