CAZyme3D

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Entry ID

Information for CAZyme ID: BAP83849.1

Basic Information

GenBank IDBAP83849.1
FamilyGH5_18
Sequence Length426
UniProt IDA0A0A1GNL0(100,100)Download
Average pLDDT?95.84
CAZy50 ID81676
CAZy50 RepNo, UCH54774.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID216816
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium longum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKFGVNYTPS  HGWFHAWLDP  DWDGIDNDLK  QISELGMDHV  RIFPIWPYLQ  PNRTWINKKG60
VADVRRMVHI  AGEHGLDAYV  DVFQGHLSSF  DFLPSWLVTW  HAGNMFTDAD  SVAAERELVK120
TMTDELSKEP  AFKGLTLGNE  VNQLSDRPHP  TKMSATSQQI  DAWLNALLPA  VAGEGHNALY180
SVNDGTWFID  GHPFTPVQSA  TKGDMTVIHS  WVFNGIAQGY  GATSEECSSY  ALYLAELAKA240
FGKDSERPVW  LQEVGAPENV  LETDYTPEFC  RKTVERAMDC  RNLWGVTWWC  SHDVPASMED300
FPFFEHSLGL  FDEQGQLKPI  GRTFGELAAQ  YRSALPAQPK  TVAVVVDVDE  AGNPVNRSAL360
GPGGSVCDLW  MKLQVAGQRP  TIITSQVAAD  QAELARRGIL  ELHADEHPYA  ARYYTAVSDP420
SFETAD426

Predicted 3D structure by AlphaFold2 with pLDDT = 95.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_18(15-294)

MKFGVNYTPS  HGWFHAWLDP  DWDGIDNDLK  QISELGMDHV  RIFPIWPYLQ  PNRTWINKKG60
VADVRRMVHI  AGEHGLDAYV  DVFQGHLSSF  DFLPSWLVTW  HAGNMFTDAD  SVAAERELVK120
TMTDELSKEP  AFKGLTLGNE  VNQLSDRPHP  TKMSATSQQI  DAWLNALLPA  VAGEGHNALY180
SVNDGTWFID  GHPFTPVQSA  TKGDMTVIHS  WVFNGIAQGY  GATSEECSSY  ALYLAELAKA240
FGKDSERPVW  LQEVGAPENV  LETDYTPEFC  RKTVERAMDC  RNLWGVTWWC  SHDVPASMED300
FPFFEHSLGL  FDEQGQLKPI  GRTFGELAAQ  YRSALPAQPK  TVAVVVDVDE  AGNPVNRSAL360
GPGGSVCDLW  MKLQVAGQRP  TIITSQVAAD  QAELARRGIL  ELHADEHPYA  ARYYTAVSDP420
SFETAD426

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help