CAZyme3D

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Entry ID

Information for CAZyme ID: BAP57782.1

Basic Information

GenBank IDBAP57782.1
FamilyGT51
Sequence Length735
UniProt IDA0A090ANR2(100,100)Download
Average pLDDT?87.21
CAZy50 ID31732
CAZy50 RepNo, ABK17908.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID40754
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyThiotrichaceae
GenusThioploca
SpeciesThioploca ingrica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKFIRVSLV  TLLLGFSIVF  GKTLLDLAPL  PTTLSVTTSP  IRKLQVLDRH  AIPLIMTYQN60
DWNIYDYVPL  HEIPELLQRI  FLLAEDKRFY  EHGGPDWRAR  WHALFQNILA  LRIVRGASTI120
TEQTVRMLYL  RPRTFWSHWL  QGIEASRLER  HFSKADILEF  YLNQVPYANQ  RRGVVQAARY180
YFDRDLDTLN  LKEMIALAVL  IRAPSRLDLR  RNKTEIEAPI  VRLAQRLFEL  NLISNTDYQE240
ILTTPLSLRE  ASLPIQATHF  VNYIYTSHAA  SPLPHLGRLY  TTLDAKLQSF  VQLILNQRIQ300
ELQNQNVSHG  AVLVVDHQTN  EVLAWVNSGR  PSPEISGSQI  DAVTIPRQPG  SALKPFLYAL360
ALEKGWTAAT  LIDDAPLAEA  VGVGLHDYRN  YSRSYYGSLR  LRDVLGNSLN  IPAIRTIQFV420
SAQSFLQRLH  QLGISSLTAR  SDYYGDGLAL  GNGGVTLLEL  VQAYTVLAYQ  GLFRPLKVLR480
NTSPTKAISV  FTPEIASIIA  DILSDSDARR  LEFGRGTLLR  FPIQTAVKTG  TSTDYRDAWA540
VGFNHHYTVG  VWLGNLDQQP  MSQVSGATGS  ALILRAIFAE  LNRYEETQPL  FLSHKLVKVN600
ICRTTGQLAT  PTCPSKLEWF  IPGSQPVSSD  QPELTPVKPL  KKAFYLKQPT  PDLQLAMDPR660
IPDEYEAFAL  MLSDTSLKVN  SIEWVVDDEV  IGTTVADTRQ  LLWPIKRGQH  LAQAKVWTIN720
APEPMTTPTV  RFYVK735

Predicted 3D structure by AlphaFold2 with pLDDT = 87.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(66-216)

MRKFIRVSLV  TLLLGFSIVF  GKTLLDLAPL  PTTLSVTTSP  IRKLQVLDRH  AIPLIMTYQN60
DWNIYDYVPL  HEIPELLQRI  FLLAEDKRFY  EHGGPDWRAR  WHALFQNILA  LRIVRGASTI120
TEQTVRMLYL  RPRTFWSHWL  QGIEASRLER  HFSKADILEF  YLNQVPYANQ  RRGVVQAARY180
YFDRDLDTLN  LKEMIALAVL  IRAPSRLDLR  RNKTEIEAPI  VRLAQRLFEL  NLISNTDYQE240
ILTTPLSLRE  ASLPIQATHF  VNYIYTSHAA  SPLPHLGRLY  TTLDAKLQSF  VQLILNQRIQ300
ELQNQNVSHG  AVLVVDHQTN  EVLAWVNSGR  PSPEISGSQI  DAVTIPRQPG  SALKPFLYAL360
ALEKGWTAAT  LIDDAPLAEA  VGVGLHDYRN  YSRSYYGSLR  LRDVLGNSLN  IPAIRTIQFV420
SAQSFLQRLH  QLGISSLTAR  SDYYGDGLAL  GNGGVTLLEL  VQAYTVLAYQ  GLFRPLKVLR480
NTSPTKAISV  FTPEIASIIA  DILSDSDARR  LEFGRGTLLR  FPIQTAVKTG  TSTDYRDAWA540
VGFNHHYTVG  VWLGNLDQQP  MSQVSGATGS  ALILRAIFAE  LNRYEETQPL  FLSHKLVKVN600
ICRTTGQLAT  PTCPSKLEWF  IPGSQPVSSD  QPELTPVKPL  KKAFYLKQPT  PDLQLAMDPR660
IPDEYEAFAL  MLSDTSLKVN  SIEWVVDDEV  IGTTVADTRQ  LLWPIKRGQH  LAQAKVWTIN720
APEPMTTPTV  RFYVK735

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help