CAZyme3D

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Entry ID

Information for CAZyme ID: BAP43746.1

Basic Information

GenBank IDBAP43746.1
FamilyGH23
Sequence Length465
UniProt IDA0A077LIQ7(100,100)Download
Average pLDDT?86.41
CAZy50 ID39404
CAZy50 RepNo, VUY43383.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1028989
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. StFLB209

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLGACVDKPN  TLERVKEDGV  LRVITRNSPA  TYFQDRNGET  GFEYELVKHF  ADDLGVKLQI60
ETADSLDELF  DQMSKPGGPV  LAAAGLIETP  NRKQQARFSH  PYLEVTPQVV  YRNGQSRPTD120
PADLVGKRIM  VLKGSSHAEQ  LAEIKKQFPA  LDYEESDAVE  VVDLLRMVDE  GQIDLTLVDS180
NELAMNQVYF  SNVRVAFDLG  ETRKQRWVVG  PGEDNSLLNE  INAYLVKSEK  NGTLQRLKDR240
YYGHVDVLGY  VGAYTFAQHL  QERLPKYEKF  FKTSAKKEEV  DWRLLAAIGY  QESLWQPTVT300
SKTGVRGLMM  LTQNTAQAMG  VSNRLDARQS  IQGGAKYFAL  VKEQLSEVPE  PDRTWLALAA360
YNVGSGHLED  ARKLAVNEGL  NPNRWLDVKK  MLPRLSQKKW  YSKTRYGYAR  GGEPVHFVAN420
IRRYYDILTW  VTQPQLEGNQ  VTEGSLHVPG  VDKTPPPAQQ  QQPGS465

Predicted 3D structure by AlphaFold2 with pLDDT = 86.41 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(276-427)

MLGACVDKPN  TLERVKEDGV  LRVITRNSPA  TYFQDRNGET  GFEYELVKHF  ADDLGVKLQI60
ETADSLDELF  DQMSKPGGPV  LAAAGLIETP  NRKQQARFSH  PYLEVTPQVV  YRNGQSRPTD120
PADLVGKRIM  VLKGSSHAEQ  LAEIKKQFPA  LDYEESDAVE  VVDLLRMVDE  GQIDLTLVDS180
NELAMNQVYF  SNVRVAFDLG  ETRKQRWVVG  PGEDNSLLNE  INAYLVKSEK  NGTLQRLKDR240
YYGHVDVLGY  VGAYTFAQHL  QERLPKYEKF  FKTSAKKEEV  DWRLLAAIGY  QESLWQPTVT300
SKTGVRGLMM  LTQNTAQAMG  VSNRLDARQS  IQGGAKYFAL  VKEQLSEVPE  PDRTWLALAA360
YNVGSGHLED  ARKLAVNEGL  NPNRWLDVKK  MLPRLSQKKW  YSKTRYGYAR  GGEPVHFVAN420
IRRYYDILTW  VTQPQLEGNQ  VTEGSLHVPG  VDKTPPPAQQ  QQPGS465

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help