CAZyme3D

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Entry ID

Information for CAZyme ID: BAM89796.1

Basic Information

GenBank IDBAM89796.1
FamilyGH17
Sequence Length518
UniProt IDM4Z943(100,100)Download
Average pLDDT?94.04
CAZy50 ID54756
CAZy50 RepNo, SPP96938.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1245469
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium oligotrophicum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MWWWLAKPIT  LARAPIELDS  KVQCVSYAPF  RGQQSPLDPT  THIDAEQIEQ  DLVQLARISE60
CVRTYSIENG  LDQVPGIASR  VGIKVIQGIW  LGSNKLKNQQ  QIGIAVDLIK  RYPNVITAVV120
VGNEVLLRGE  MTTADLAATI  RSVKAQVQVP  VTYADVWEFW  LRNRELYDIV  DFVTVHILPY180
WEDIPVRAKF  AASHVDTIRQ  QVGVAFPGKE  ILIGETGWPS  EGRMREGALP  SRANQARVVS240
EILGLAKREN  FRVNLIEAYD  QPWKRKLEGT  VGGYWGLISD  DQRALKYPPG  EPVSNYPLWK300
LQMGGGMILS  FVVFLAGWLT  VRRRPWPPHL  SAWIGVGISA  TTAGVLFGMA  ADKMFYESLG360
IGGWLQWGGL  LAAGVLAPIL  AANAAMAGRP  LPTFLDLLGP  NDGRKQLKIT  YVLGLVLVVT420
VLIAAETALG  FVFDPRYRDF  PFASLTMAVV  PFAILLGNRP  AQGARPIAEA  SFAGLLAISS480
VFVIYNEGRD  NWQAMWTCAM  YLVLAFTLWR  ARAVQSRG518

Predicted 3D structure by AlphaFold2 with pLDDT = 94.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MWWWLAKPIT  LARAPIELDS  KVQCVSYAPF  RGQQSPLDPT  THIDAEQIEQ  DLVQLARISE60
CVRTYSIENG  LDQVPGIASR  VGIKVIQGIW  LGSNKLKNQQ  QIGIAVDLIK  RYPNVITAVV120
VGNEVLLRGE  MTTADLAATI  RSVKAQVQVP  VTYADVWEFW  LRNRELYDIV  DFVTVHILPY180
WEDIPVRAKF  AASHVDTIRQ  QVGVAFPGKE  ILIGETGWPS  EGRMREGALP  SRANQARVVS240
EILGLAKREN  FRVNLIEAYD  QPWKRKLEGT  VGGYWGLISD  DQRALKYPPG  EPVSNYPLWK300
LQMGGGMILS  FVVFLAGWLT  VRRRPWPPHL  SAWIGVGISA  TTAGVLFGMA  ADKMFYESLG360
IGGWLQWGGL  LAAGVLAPIL  AANAAMAGRP  LPTFLDLLGP  NDGRKQLKIT  YVLGLVLVVT420
VLIAAETALG  FVFDPRYRDF  PFASLTMAVV  PFAILLGNRP  AQGARPIAEA  SFAGLLAISS480
VFVIYNEGRD  NWQAMWTCAM  YLVLAFTLWR  ARAVQSRG518

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help