CAZyme3D

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Entry ID

Information for CAZyme ID: BAL58346.1

Basic Information

GenBank IDBAL58346.1
FamilyGT4
Sequence Length391
UniProt IDH5SQB0(100,100)Download
Average pLDDT?90.22
CAZy50 ID103561
CAZy50 RepNo, SQD92779.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1446466
KingdomBacteria
PhylumCandidatus Bipolaricaulota
Class
Order
Family
GenusCandidatus Acetithermum
SpeciesCandidatus Acetithermum autotrophicum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKIGIFTDTF  TPQINGVTSI  IEELHRVLTR  QGHEVFIFAP  AYSRAQRSEN  GHIFRFPALT60
AYFHKDSRVV  IPYDRRASAV  FPRLDVVYSH  TPVSMGLLAL  RVARKYDLPH  VHTYHTLFTE120
YLHYLPRLIR  PTRRMAERIS  AAFCNRCDAI  TTPSHAMREE  LLRYGVEKPI  YVLPFGVDIE180
PFERPVSTDV  RSLLGLAPNE  FFLLYAGRLG  TEKNLHFLLR  AFRVLVDRWG  GPQPLRLVLA240
GGGPHRPLFE  AYAKELGLSE  RVLFTGFIPR  AELVDYYRAA  DLFVFASKTE  TQGLVLMEAM300
AAGLPAVAVR  AMGVTDVVFD  GETGVLVPED  EEIFAQTVSA  LLQDPRRREQ  LRAGAHHKAR360
EMSIQHSVTR  LIEIFEGLRM  GKHPAQKIEA  R391

Predicted 3D structure by AlphaFold2 with pLDDT = 90.22 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(198-350)

MKIGIFTDTF  TPQINGVTSI  IEELHRVLTR  QGHEVFIFAP  AYSRAQRSEN  GHIFRFPALT60
AYFHKDSRVV  IPYDRRASAV  FPRLDVVYSH  TPVSMGLLAL  RVARKYDLPH  VHTYHTLFTE120
YLHYLPRLIR  PTRRMAERIS  AAFCNRCDAI  TTPSHAMREE  LLRYGVEKPI  YVLPFGVDIE180
PFERPVSTDV  RSLLGLAPNE  FFLLYAGRLG  TEKNLHFLLR  AFRVLVDRWG  GPQPLRLVLA240
GGGPHRPLFE  AYAKELGLSE  RVLFTGFIPR  AELVDYYRAA  DLFVFASKTE  TQGLVLMEAM300
AAGLPAVAVR  AMGVTDVVFD  GETGVLVPED  EEIFAQTVSA  LLQDPRRREQ  LRAGAHHKAR360
EMSIQHSVTR  LIEIFEGLRM  GKHPAQKIEA  R391

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help