CAZyme3D

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Entry ID

Information for CAZyme ID: BAG91996.1

Basic Information

GenBank IDBAG91996.1
FamilyPL1_1
Sequence Length448
UniProt IDB7EHZ9(100,100)Download
Average pLDDT?87.63
CAZy50 ID43618
CAZy50 RepNo, VDD58900.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39947
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAGSVVTRSP  LCSILFYVLA  TAAAATATAT  LVGNITADEE  YWAKRSEVAR  SFNRAAYVSD60
PVAVLNRFNE  DVLNTTTATA  AAARRSLMRR  YRRRGPCTVT  NPIDLCWRCR  KNWASRRKRL120
AKCAMGFGHK  ATGGLAGKIY  IVTDAGDEHL  VIPRRGTLRH  AVIQERPLWI  VFARSMVIRL180
AKELIVTSDK  TIDGRGAQVH  VTGAQITVQA  VSNVIIHNLH  IHNSVPRSGG  LIRDSMHHFG240
IRGESDGDGI  SVMGSSNIWI  DHVSMSNCSD  GLIDITDGST  AITISNSHFT  KHDHVMLFGA300
RDDSPKDKIM  QVTLAFNHFG  KGLVQRMPRC  RFGFFHMVNN  DYTHWLMYAI  GGNMNPTIIS360
QGNRFRASDD  MKLKEVTKRE  YTSYDEYKEW  VWKSQDDLFL  NGAFFNESGG  RNERRYNRLD420
LIQARNGRYV  GRMTRFAGTL  PCRVGKKC448

Predicted 3D structure by AlphaFold2 with pLDDT = 87.63 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL1_1(170-367)

MAGSVVTRSP  LCSILFYVLA  TAAAATATAT  LVGNITADEE  YWAKRSEVAR  SFNRAAYVSD60
PVAVLNRFNE  DVLNTTTATA  AAARRSLMRR  YRRRGPCTVT  NPIDLCWRCR  KNWASRRKRL120
AKCAMGFGHK  ATGGLAGKIY  IVTDAGDEHL  VIPRRGTLRH  AVIQERPLWI  VFARSMVIRL180
AKELIVTSDK  TIDGRGAQVH  VTGAQITVQA  VSNVIIHNLH  IHNSVPRSGG  LIRDSMHHFG240
IRGESDGDGI  SVMGSSNIWI  DHVSMSNCSD  GLIDITDGST  AITISNSHFT  KHDHVMLFGA300
RDDSPKDKIM  QVTLAFNHFG  KGLVQRMPRC  RFGFFHMVNN  DYTHWLMYAI  GGNMNPTIIS360
QGNRFRASDD  MKLKEVTKRE  YTSYDEYKEW  VWKSQDDLFL  NGAFFNESGG  RNERRYNRLD420
LIQARNGRYV  GRMTRFAGTL  PCRVGKKC448

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help