CAZyme3D

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Entry ID

Information for CAZyme ID: BAG90349.1

Basic Information

GenBank IDBAG90349.1
FamilyGH17
Sequence Length254
UniProt IDQ60DF2(100,100)Download
Average pLDDT?88.53
CAZy50 ID69734
CAZy50 RepNo, BAS98062.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39947
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQSLLPAMQS  VHQALLDLGL  AGRVNVSTAH  SVNILATSYP  PSAGAFREDL  AQYIQPLLNF60
HAEVGSPFLV  NAYPFFAYKA  SPASVSLPYV  LFEPNPGVRD  PATNLTYDNM  LYAQIDAVYA120
AMKAMGHADI  TVRISETGWP  SKGDDDEVGA  TPQNAAAYNG  NLMKRIAAGE  GTPLKPAVPV180
DVFVFALFNE  DMKPGPSSER  NYGLFYPNGT  PVYNIGFDAA  SFSPSPTTST  FSSSSRPTST240
FLMGVVVLLA  AFLL254

Predicted 3D structure by AlphaFold2 with pLDDT = 88.53 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(2-217)

MQSLLPAMQS  VHQALLDLGL  AGRVNVSTAH  SVNILATSYP  PSAGAFREDL  AQYIQPLLNF60
HAEVGSPFLV  NAYPFFAYKA  SPASVSLPYV  LFEPNPGVRD  PATNLTYDNM  LYAQIDAVYA120
AMKAMGHADI  TVRISETGWP  SKGDDDEVGA  TPQNAAAYNG  NLMKRIAAGE  GTPLKPAVPV180
DVFVFALFNE  DMKPGPSSER  NYGLFYPNGT  PVYNIGFDAA  SFSPSPTTST  FSSSSRPTST240
FLMGVVVLLA  AFLL254

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help