CAZyme3D

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Entry ID

Information for CAZyme ID: BAF91416.1

Basic Information

GenBank IDBAF91416.1
FamilyGT80
Sequence Length497
UniProt IDA8R0T5(100,100)Download
Average pLDDT?93.19
CAZy50 ID41694
CAZy50 RepNo, BAA25316.1
Structure Cluster-
EC Number(s)2.4.99.1
Substrates(s)-

Taxonomy

Tax ID553611
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium leiognathi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRIFCLVSA  ILLSACNDNQ  NTVDVVVSTV  NDNVIENNTY  QVKPIDTPTT  FDSYSWIQTC60
GTPILKDDEK  YSLSFDFVAP  ELDQDEKFCF  EFTGDVDGKR  YVTQTNLTVV  APTLEVYVDH120
ASLPSLQQLM  KIIQQKNEYS  QNERFISWGR  IRLTEDNAEK  LNAHIYPLAG  NNTSQELVDA180
VIDYADSKNR  LNLELNTNTG  HSFRNIAPIL  RATSSKNNIL  ISNINLYDDG  SAEYVSLYNW240
KDTDNKSQKL  SDSFLVLKDY  LNGISSEKPN  GIYSIYNWHQ  LYHSSYYFLR  KDYLTVETKL300
HDLREYLGGS  LKQMSWDTFS  QLSKGDKELF  LNIVGFDQEK  LQQEYQQSEL  PNFVFTGTTT360
WAGGETKEYY  AQQQVNVVNN  AINETSPYYL  GREHDLFFKG  HPRGGIINDI  ILGSFNNMID420
IPAKVSFEVL  MMTGMLPDTV  GGIASSLYFS  IPAEKVSFIV  FTSSDTITDR  EDALKSPLVQ480
VMMTLGIVKE  KDVLFWC497

Predicted 3D structure by AlphaFold2 with pLDDT = 93.19 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT80(113-491)

MKRIFCLVSA  ILLSACNDNQ  NTVDVVVSTV  NDNVIENNTY  QVKPIDTPTT  FDSYSWIQTC60
GTPILKDDEK  YSLSFDFVAP  ELDQDEKFCF  EFTGDVDGKR  YVTQTNLTVV  APTLEVYVDH120
ASLPSLQQLM  KIIQQKNEYS  QNERFISWGR  IRLTEDNAEK  LNAHIYPLAG  NNTSQELVDA180
VIDYADSKNR  LNLELNTNTG  HSFRNIAPIL  RATSSKNNIL  ISNINLYDDG  SAEYVSLYNW240
KDTDNKSQKL  SDSFLVLKDY  LNGISSEKPN  GIYSIYNWHQ  LYHSSYYFLR  KDYLTVETKL300
HDLREYLGGS  LKQMSWDTFS  QLSKGDKELF  LNIVGFDQEK  LQQEYQQSEL  PNFVFTGTTT360
WAGGETKEYY  AQQQVNVVNN  AINETSPYYL  GREHDLFFKG  HPRGGIINDI  ILGSFNNMID420
IPAKVSFEVL  MMTGMLPDTV  GGIASSLYFS  IPAEKVSFIV  FTSSDTITDR  EDALKSPLVQ480
VMMTLGIVKE  KDVLFWC497

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help