CAZyme3D

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Entry ID

Information for CAZyme ID: BAF88834.1

Basic Information

GenBank IDBAF88834.1
FamilyCE4
Sequence Length284
UniProt IDA8I9V3(100,100)Download
Average pLDDT?87.58
CAZy50 ID145976
CAZy50 RepNo, AEI03384.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID438753
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusAzorhizobium
SpeciesAzorhizobium caulinodans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPLQEPHGMP  ASNVSRTCVL  LATVLAAVLS  FAPARPASAA  SAAAACPGRP  DALGTTRVIE60
VPAGVQVGTK  SFPQTLPLEK  GEVVLTFDDG  PWPHTTAAIL  DALKAECVKA  TFFLIGENAR120
ARPELVKREI  AEGHTVAHHS  MTHPDATLAK  LPFPAAMAEV  TKGMAADDLA  AYGSAGSAEQ180
LAPRVPFFRF  PGFASTPELL  EALRARGVSV  FGADFWASDW  NKMTPEQELA  LVLQRLDATG240
GGIVLFHDTK  AQTAAMIPAF  LRALAQRGYR  VVHMVPARQR  ATER284

Predicted 3D structure by AlphaFold2 with pLDDT = 87.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(78-211)

MPLQEPHGMP  ASNVSRTCVL  LATVLAAVLS  FAPARPASAA  SAAAACPGRP  DALGTTRVIE60
VPAGVQVGTK  SFPQTLPLEK  GEVVLTFDDG  PWPHTTAAIL  DALKAECVKA  TFFLIGENAR120
ARPELVKREI  AEGHTVAHHS  MTHPDATLAK  LPFPAAMAEV  TKGMAADDLA  AYGSAGSAEQ180
LAPRVPFFRF  PGFASTPELL  EALRARGVSV  FGADFWASDW  NKMTPEQELA  LVLQRLDATG240
GGIVLFHDTK  AQTAAMIPAF  LRALAQRGYR  VVHMVPARQR  ATER284

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help