CAZyme3D

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Entry ID

Information for CAZyme ID: BAF16834.1

Basic Information

GenBank IDBAF16834.1
FamilyCBM49, GH9
Sequence Length629
UniProt IDQ6L4I2(100,100)Download
Average pLDDT?90.19
CAZy50 ID45960
CAZy50 RepNo, BBM99336.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39947
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAKNGGAHGA  ATLFGLLALA  SMVKLGFVAG  GGHDYAMALR  KSILYFQAQR  SGVLPPNQRV60
SWRASSGLFD  GKANGVDLVG  GYYDAGDNVK  FGLPMAFTVT  MMSWSILEYG  KQMAAAGELR120
NAMDAVKWGT  DYFIKAHPEP  DVLYGEVGDG  DTDHSCWQRP  EDMTTSRQAF  RVDPQHPGSD180
LAAETAAAMA  AASIVFRGTY  PGYANLLLVH  SKQLFEFADK  YRGKYDASIT  VARNYYGSFS240
GYGDELLWAA  AWLFEATEDR  SYLEYLAGNG  EALGGTGWSI  NQFGWDVKYP  GVQVLAAKFL300
LQGRAGDHAA  ALQRYRQNAE  FFVCSCVGKG  AVNVARTPGG  MMYHQRWNNL  QFVTSASFLL360
TVYADFAAIS  GRGAVHCPAG  AAQPFDILKF  VKSQVNYILG  DNPRGTSYMV  GYGASYPRQV420
HHRGASIVSI  KRDPSFVSCQ  EGYSSWYGRE  AGNPNLLDGA  VVGGPDEYDD  FADERDNYEQ480
TEAATYNNAP  LLGVLARLAA  SCGGLKEEEY  EQETATPVVN  RTSSSSSLPA  TATAIGIEQN540
VTGTWARRRR  TYYRYAVTVT  NRSRGKTVRE  LHLGVSGLRG  RLWGLEEARY  GYVPPRWLPA600
LRPGRSLRFV  YVQPAPAPAN  IWVTGYKLV629

Predicted 3D structure by AlphaFold2 with pLDDT = 90.19 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH9(34-496)+CBM49(535-613)

MAKNGGAHGA  ATLFGLLALA  SMVKLGFVAG  GGHDYAMALR  KSILYFQAQR  SGVLPPNQRV60
SWRASSGLFD  GKANGVDLVG  GYYDAGDNVK  FGLPMAFTVT  MMSWSILEYG  KQMAAAGELR120
NAMDAVKWGT  DYFIKAHPEP  DVLYGEVGDG  DTDHSCWQRP  EDMTTSRQAF  RVDPQHPGSD180
LAAETAAAMA  AASIVFRGTY  PGYANLLLVH  SKQLFEFADK  YRGKYDASIT  VARNYYGSFS240
GYGDELLWAA  AWLFEATEDR  SYLEYLAGNG  EALGGTGWSI  NQFGWDVKYP  GVQVLAAKFL300
LQGRAGDHAA  ALQRYRQNAE  FFVCSCVGKG  AVNVARTPGG  MMYHQRWNNL  QFVTSASFLL360
TVYADFAAIS  GRGAVHCPAG  AAQPFDILKF  VKSQVNYILG  DNPRGTSYMV  GYGASYPRQV420
HHRGASIVSI  KRDPSFVSCQ  EGYSSWYGRE  AGNPNLLDGA  VVGGPDEYDD  FADERDNYEQ480
TEAATYNNAP  LLGVLARLAA  SCGGLKEEEY  EQETATPVVN  RTSSSSSLPA  TATAIGIEQN540
VTGTWARRRR  TYYRYAVTVT  NRSRGKTVRE  LHLGVSGLRG  RLWGLEEARY  GYVPPRWLPA600
LRPGRSLRFV  YVQPAPAPAN  IWVTGYKLV629

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help