CAZyme3D

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Entry ID

Information for CAZyme ID: BAF16157.1

Basic Information

GenBank IDBAF16157.1
FamilyCBM49, GH9
Sequence Length625
UniProt IDQ0J930(100,100)Download
Average pLDDT?90.17
CAZy50 ID45516
CAZy50 RepNo, CAG7875685.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39947
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAATMNKTPA  TTFLLIPAAA  SLVLLLAAAA  SVEASAFDYA  GAFDKCLLFF  EAQRSGKLPD60
DRLVRWRGDS  ALTDGFSQGV  DLVGGYYDSG  DHVKFGLPMA  YAVTMLSWGV  VEFEKEMVDG120
NKLHRVLDAI  RWGTNYFVKA  HTQHNALWVQ  VGDGDSDHLC  WERAEDMSTP  RTAFKIDINN180
PGSEVAGETA  AALAAAAKAF  KPYDRMYSDL  LLLHSKQLFT  FADTFRGKYD  DSLQSAKKFY240
PSASGYQDEL  LWAAAWLYEA  TGDEQYLRYV  SQNAEAFGGT  GWAVTEFSWD  NKYAGLQVLL300
SKVLFEQGGS  AAGYADTLKQ  YQAKAEFFLC  ACLQKNNGHN  VKMTPGGLMY  VSDWSNMQYV360
SSSAFLLTVY  ADYLAESRGT  LRCPDGEVKP  AEILRFARSQ  VDYVLGKNPK  GMSYMVGYGS420
YYPTHVHHRG  ASIPSIYAMN  ATVGCMESFD  KYYNSKNADP  NVLHGALVGG  PDANDAYDDD480
RCNYQHAEPT  LAGNAPMSGV  FARLAASPAD  NTPEYTPAPN  APSPSNGGSP  LEFVHTVTNT540
WKANGVDYYR  HVVTAKNTCG  HAITYLKLQI  KELSGEIYGV  SRTNAKDMYE  FPSWMTRLDA600
GAQLTIVYIQ  GGPAAKIAVV  EYKTA625

Predicted 3D structure by AlphaFold2 with pLDDT = 90.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH9(38-502)+CBM49(531-610)

MAATMNKTPA  TTFLLIPAAA  SLVLLLAAAA  SVEASAFDYA  GAFDKCLLFF  EAQRSGKLPD60
DRLVRWRGDS  ALTDGFSQGV  DLVGGYYDSG  DHVKFGLPMA  YAVTMLSWGV  VEFEKEMVDG120
NKLHRVLDAI  RWGTNYFVKA  HTQHNALWVQ  VGDGDSDHLC  WERAEDMSTP  RTAFKIDINN180
PGSEVAGETA  AALAAAAKAF  KPYDRMYSDL  LLLHSKQLFT  FADTFRGKYD  DSLQSAKKFY240
PSASGYQDEL  LWAAAWLYEA  TGDEQYLRYV  SQNAEAFGGT  GWAVTEFSWD  NKYAGLQVLL300
SKVLFEQGGS  AAGYADTLKQ  YQAKAEFFLC  ACLQKNNGHN  VKMTPGGLMY  VSDWSNMQYV360
SSSAFLLTVY  ADYLAESRGT  LRCPDGEVKP  AEILRFARSQ  VDYVLGKNPK  GMSYMVGYGS420
YYPTHVHHRG  ASIPSIYAMN  ATVGCMESFD  KYYNSKNADP  NVLHGALVGG  PDANDAYDDD480
RCNYQHAEPT  LAGNAPMSGV  FARLAASPAD  NTPEYTPAPN  APSPSNGGSP  LEFVHTVTNT540
WKANGVDYYR  HVVTAKNTCG  HAITYLKLQI  KELSGEIYGV  SRTNAKDMYE  FPSWMTRLDA600
GAQLTIVYIQ  GGPAAKIAVV  EYKTA625

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help