CAZyme3D

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Entry ID

Information for CAZyme ID: BAF01419.1

Basic Information

GenBank IDBAF01419.1
FamilyGT90
Sequence Length523
UniProt IDQ0WN81(100,100)Download
Average pLDDT?85.84
CAZy50 ID3979
CAZy50 RepNo, VDD09239.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSSHVVDDQR  QPNNSISSLS  SKLTKPWITT  TIFIFVFFFF  IILVGASLRW  MDMFLIGGGR60
IKVTPIFTRN  TNATIPKEKL  TTPLNFTLQC  SLDQNIATQT  CPASNPEKSQ  PSKDEPETCP120
DYFRWIHKDL  EAWRETGITR  ETLERASDKA  HFRLIIKGGR  VYVHQYKKSF  QTRDVFTIWG180
IVQLLRMYPG  QVPDLELLFM  CHDSPEIWRR  DYRPRPGVNV  TWPPPPLFHY  CGHSGAFDIV240
FPDWSFWGWP  EINIKEWNKQ  SELISEGIKK  VKWEEREPYA  YWKGNPGVAM  VRRDLMHCHD300
PMVHLYRQDW  SREGRIGYRT  SNLEDQCTHR  YKIYVEGRAW  SVSEKYILAC  DSMTLLVKPF360
YFDFFTRSLV  PMEHYWPIRP  QEKCSDIVFA  VHWGNNNTKK  AKAIGRNGSG  YVRKNLKMKY420
VYDYMLHLLQ  SYGKLMKMNV  EVPQGAKEVC  PETMACPING  GRMRQSMDDS  LVMSPSVKAT480
CEMPPPFEED  ELKKFLEKKE  SVEKEVEKWT  NEYWQEQKKI  LKH523

Predicted 3D structure by AlphaFold2 with pLDDT = 85.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT90(191-437)

MSSHVVDDQR  QPNNSISSLS  SKLTKPWITT  TIFIFVFFFF  IILVGASLRW  MDMFLIGGGR60
IKVTPIFTRN  TNATIPKEKL  TTPLNFTLQC  SLDQNIATQT  CPASNPEKSQ  PSKDEPETCP120
DYFRWIHKDL  EAWRETGITR  ETLERASDKA  HFRLIIKGGR  VYVHQYKKSF  QTRDVFTIWG180
IVQLLRMYPG  QVPDLELLFM  CHDSPEIWRR  DYRPRPGVNV  TWPPPPLFHY  CGHSGAFDIV240
FPDWSFWGWP  EINIKEWNKQ  SELISEGIKK  VKWEEREPYA  YWKGNPGVAM  VRRDLMHCHD300
PMVHLYRQDW  SREGRIGYRT  SNLEDQCTHR  YKIYVEGRAW  SVSEKYILAC  DSMTLLVKPF360
YFDFFTRSLV  PMEHYWPIRP  QEKCSDIVFA  VHWGNNNTKK  AKAIGRNGSG  YVRKNLKMKY420
VYDYMLHLLQ  SYGKLMKMNV  EVPQGAKEVC  PETMACPING  GRMRQSMDDS  LVMSPSVKAT480
CEMPPPFEED  ELKKFLEKKE  SVEKEVEKWT  NEYWQEQKKI  LKH523

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help