CAZyme3D

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Entry ID

Information for CAZyme ID: BAF00136.1

Basic Information

GenBank IDBAF00136.1
FamilyCBM18, GH19
Sequence Length264
UniProt IDO24658(100,100)Download
Average pLDDT?89.68
CAZy50 ID36322
CAZy50 RepNo, CAE6047466.1
Structure Cluster-
EC Number(s)3.2.1.14
Substrates(s)chitin

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAFTKISLVL  LLCLLGFFSE  TVKSQNCGCA  PNLCCSQFGY  CGTDDAYCGV  GCRSGPCRGS60
GTPTGGSVGS  IVTQGFFNNI  INQAGNGCAG  KRFYTRDSFV  NAANTFPNFA  NSVTRREIAT120
MFAHFTHETG  HFCYIEEING  ATRNYCQSSN  TQYPCAPGKG  YFGRGPIQLS  WNYNYGACGQ180
SLGLDLLRQP  ELVGSNPTVA  FRTGLWFWMN  SVRPVLNQGF  GATIRAINGM  ECNGGNSGAV240
NARIGYYRDY  CGQLGVDPGP  NLSC264

Predicted 3D structure by AlphaFold2 with pLDDT = 89.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(24-57)+GH19(68-264)

MAFTKISLVL  LLCLLGFFSE  TVKSQNCGCA  PNLCCSQFGY  CGTDDAYCGV  GCRSGPCRGS60
GTPTGGSVGS  IVTQGFFNNI  INQAGNGCAG  KRFYTRDSFV  NAANTFPNFA  NSVTRREIAT120
MFAHFTHETG  HFCYIEEING  ATRNYCQSSN  TQYPCAPGKG  YFGRGPIQLS  WNYNYGACGQ180
SLGLDLLRQP  ELVGSNPTVA  FRTGLWFWMN  SVRPVLNQGF  GATIRAINGM  ECNGGNSGAV240
NARIGYYRDY  CGQLGVDPGP  NLSC264

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help