CAZyme3D

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Entry ID

Information for CAZyme ID: BAE43638.1

Basic Information

GenBank IDBAE43638.1
FamilyCBM18, GH19
Sequence Length321
UniProt IDQ76JK0(100,100)Download
Average pLDDT?89.21
CAZy50 ID39117
CAZy50 RepNo, WIA22355.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3369
KingdomEukaryota
PhylumStreptophyta
ClassPinopsida
OrderCupressales
FamilyCupressaceae
GenusCryptomeria
SpeciesCryptomeria japonica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAKVKMLICS  ILALVVVGIP  AFAENCGSQA  GGAVCPGGLC  CSQYGWCGNT  PDHCRVPGCQ60
SQCGGGSGPS  PPSPSGQGVA  SIITENVFNQ  MLKHRNEGSC  PGKNFYNYNA  FIAAAKAFNG120
FGTTGDITAR  KRELAAFLAQ  TSHETTGGWA  SAPDGPYAWG  YCYLKENGGG  DYCNSQQAPC180
ASGKQYYGRG  PIQLSWNYNY  IAAGKAIGFD  GLNDPDIVAR  DPTISFKTGI  WFWMTAQSPK240
PSCHDVMTGR  WKPSGSDSAA  GRTAGFGVTT  NIINGGLECG  KGSDSRVQDR  IGFYKRYCDI300
LGVSYGPNLD  CFNQRPFGFA  L321

Predicted 3D structure by AlphaFold2 with pLDDT = 89.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(25-63)+GH19(79-311)

MAKVKMLICS  ILALVVVGIP  AFAENCGSQA  GGAVCPGGLC  CSQYGWCGNT  PDHCRVPGCQ60
SQCGGGSGPS  PPSPSGQGVA  SIITENVFNQ  MLKHRNEGSC  PGKNFYNYNA  FIAAAKAFNG120
FGTTGDITAR  KRELAAFLAQ  TSHETTGGWA  SAPDGPYAWG  YCYLKENGGG  DYCNSQQAPC180
ASGKQYYGRG  PIQLSWNYNY  IAAGKAIGFD  GLNDPDIVAR  DPTISFKTGI  WFWMTAQSPK240
PSCHDVMTGR  WKPSGSDSAA  GRTAGFGVTT  NIINGGLECG  KGSDSRVQDR  IGFYKRYCDI300
LGVSYGPNLD  CFNQRPFGFA  L321

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help