CAZyme3D

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Entry ID

Information for CAZyme ID: BAE41698.1

Basic Information

GenBank IDBAE41698.1
FamilyGT90
Sequence Length502
UniProt IDQ9JHP7(100,100)Download
Average pLDDT?92.50
CAZy50 ID63926
CAZy50 RepNo, AWP08960.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID10090
KingdomEukaryota
PhylumChordata
ClassMammalia
OrderRodentia
FamilyMuridae
GenusMus
SpeciesMus musculus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFSISLLSCL  FLGTVPALAQ  TGGERRLSPE  KSEIWGPGLK  AHVVLPARYF  YIRAVDTSGE60
QFTSSPGEKV  FQVKISAPDE  QFTRVGVQVL  DRKDGSFIVR  YRMYASYRNL  KIEVKHHGQH120
VAESPYVLRG  PVYHENCDCP  LEDSAAWLRE  MNCSETISQI  QKDLAHFPTV  DPEKIAAEIP180
KRFGQRQSLC  HYTLKDNKVY  IKTHGEHVGF  RIFMDAILLS  LTRKVRMPDV  EFFVNLGDWP240
LEKKKSNSNI  QPIFSWCGST  ESRDIVMPTY  DLTDSVLETM  GRVSLDMMSV  QANTGPPWES300
KNSTAVWRGR  DSRKERLELV  KLSRKHPELI  DAAFTNFFFF  KHDESLYGPI  VKHISFFDFF360
KHKYQINIDG  TVAAYRLPYL  LVGDSVVLKQ  DSIYYEHFYN  ELQPWKHYIP  VKSNLSDLLE420
KLKWAKEHDA  EAKKIAKAGQ  EFARNNLMGD  DIFCYYFKLF  QGYANLQVSE  PQIREGMKRV480
EPQSEDDLFP  CTCHRRKAKD  EL502

Predicted 3D structure by AlphaFold2 with pLDDT = 92.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT90(226-467)

MFSISLLSCL  FLGTVPALAQ  TGGERRLSPE  KSEIWGPGLK  AHVVLPARYF  YIRAVDTSGE60
QFTSSPGEKV  FQVKISAPDE  QFTRVGVQVL  DRKDGSFIVR  YRMYASYRNL  KIEVKHHGQH120
VAESPYVLRG  PVYHENCDCP  LEDSAAWLRE  MNCSETISQI  QKDLAHFPTV  DPEKIAAEIP180
KRFGQRQSLC  HYTLKDNKVY  IKTHGEHVGF  RIFMDAILLS  LTRKVRMPDV  EFFVNLGDWP240
LEKKKSNSNI  QPIFSWCGST  ESRDIVMPTY  DLTDSVLETM  GRVSLDMMSV  QANTGPPWES300
KNSTAVWRGR  DSRKERLELV  KLSRKHPELI  DAAFTNFFFF  KHDESLYGPI  VKHISFFDFF360
KHKYQINIDG  TVAAYRLPYL  LVGDSVVLKQ  DSIYYEHFYN  ELQPWKHYIP  VKSNLSDLLE420
KLKWAKEHDA  EAKKIAKAGQ  EFARNNLMGD  DIFCYYFKLF  QGYANLQVSE  PQIREGMKRV480
EPQSEDDLFP  CTCHRRKAKD  EL502

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help