CAZyme3D

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Entry ID

Information for CAZyme ID: BAD93969.1

Basic Information

GenBank IDBAD93969.1
FamilyGH51
Sequence Length280
UniProt IDQ9SG80(100,100)Download
Average pLDDT?91.87
CAZy50 ID2628
CAZy50 RepNo, CAG7861148.1
Structure Cluster-
EC Number(s)3.2.1.37 | 3.2.1.55
Substrates(s)arabinan

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

YIVFYDAIKK  AYPDIKIISN  CDGSSHPLDH  PADYYDYHIY  TSASNLFSMY  HQFDRTSRKG60
PKAFVSEYAV  TGKDAGTGSL  LASLAEAAFL  IGLEKNSDIV  EMASYAPLFV  NTNDRRWNPD120
AIVFNSSHLY  GTPSYWVQRF  FAESSGATLL  TSTLKGNSTS  LVASAISWKN  NGKDYIRIKA180
VNFGANSENM  QVLVTGLDPN  VMRVSGSKKT  VLTSTNVMDE  NSFSQPEKVV  PHESLLELAE240
EDMTVVLPPH  SFSSFDLLKE  SAKIRMPISD  SSSHQKTTTV  280

Predicted 3D structure by AlphaFold2 with pLDDT = 91.87 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH51(3-272)

MDMESWKLLR  SVCVLSFLLG  SCFVYQSLRV  VDAQEDPKPA  VTLQVDASNG  GGRPIPETLF60
GIFFEEINHA  GAGGLWAELV  SNRGFEAGGQ  NTPSNIWPWS  IVGDHSSIYV  ATDRSSCFER120
NKIALRMDVL  CDSKGCPSGG  VGVYNPGYWG  MNIEEGKKYK  VALYVRSTGD  IDLSVSLTSS180
NGSRTLASEK  IIASASDVSK  WIKKEVLLEA  KATDPSARLQ  LTTTKKGSIW  IDQVSAMPVD240
THKGHGFRND  LFQMMADIKP  RFIRFPGGCF  VEGEWLSNAF  RWKETVGPWE  ERPGHFGDVW300
KYWTDDGLGH  FEFFQMAEDI  GAAPIWVFNN  GISHNDEVET  ASIMPFVQEA  LDGIEFARGD360
ANSTWGSVRA  KMGRQEPFEL  KYVAIGNEDC  GKTYYRGNYI  VFYDAIKKAY  PDIKIISNCD420
GSSHPLDHPA  DYYDYHIYTS  ASNLFSMYHQ  FDRTSRKGPK  AFVSEYAVTG  KDAGTGSLLA480
SLAEAAFLIG  LEKNSDIVEM  ASYAPLFVNT  NDRRWNPDAI  VFNSSHLYGT  PSYWVQRFFA540
ESSGATLLTS  TLKGNSTSLV  ASAISWKNNG  KDYIRIKAVN  FGANSENMQV  LVTGLDPNVM600
RVSGSKKTVL  TSTNVMDENS  FSQPEKVVPH  ESLLELAEED  MTVVLPPHSF  SSFDLLKESA660
KIRMPISDSS  SHQKTTTV678

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help