CAZyme3D

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Entry ID

Information for CAZyme ID: BAD47020.1

Basic Information

GenBank IDBAD47020.1
FamilyCBM35, GH27
Sequence Length530
UniProt IDQ64ZQ6(100,100)Download
Average pLDDT?93.72
CAZy50 ID62796
CAZy50 RepNo, QCT76854.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID295405
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKKKVTTYC  CLLLLASFFT  TVTAQNTNTP  MMGWSSWNTF  RVHINEELIK  ETADAMVNRG60
LKDVGYGYVN  IDDGYFGGRN  SEGRLFANKK  KFPNGMRVLS  DYIHSKGLKA  GIYSDAGSNT120
CGSIYDADTL  GIGVGLWKHD  DIDCQTFLKD  WGYDFIKIDW  CGGEATGQSE  QQRYTDIYKA180
IRRTGRTDVR  YNICRWQFPG  TWATQLAGSW  RIHTDINPRF  TTIDRIIERN  LYLAPYASPG240
HYNDMDMLEV  GRGLTEDEEK  THFGIWSILS  SPLMIGCDLR  TIPEKTLSII  TNKEVIALNQ300
DSLGLQAEAI  ERGKDYLILS  KAIQKREGKL  RAVALYNRSN  TDQQIRVDFD  KLYLSGDVRV360
RDLWNHQEMG  TFTDYYETLV  PAHGTALIRL  EGSKRHDRTC  YEAEYAFMQE  FLPDNKQAAH420
FTPKSGASGE  YIMKNLGNSP  SNWAEFRNVY  ISKGGDYQLK  LTYYSGDKRD  IQIAVNGTEY480
KQSNLYSGTW  DQAATTTIKV  KLRKGYNTIR  LYNSYGWAPD  IDKMEIIKGR  530

Predicted 3D structure by AlphaFold2 with pLDDT = 93.72 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH27(137-369)+CBM35(401-526)

MKKKKVTTYC  CLLLLASFFT  TVTAQNTNTP  MMGWSSWNTF  RVHINEELIK  ETADAMVNRG60
LKDVGYGYVN  IDDGYFGGRN  SEGRLFANKK  KFPNGMRVLS  DYIHSKGLKA  GIYSDAGSNT120
CGSIYDADTL  GIGVGLWKHD  DIDCQTFLKD  WGYDFIKIDW  CGGEATGQSE  QQRYTDIYKA180
IRRTGRTDVR  YNICRWQFPG  TWATQLAGSW  RIHTDINPRF  TTIDRIIERN  LYLAPYASPG240
HYNDMDMLEV  GRGLTEDEEK  THFGIWSILS  SPLMIGCDLR  TIPEKTLSII  TNKEVIALNQ300
DSLGLQAEAI  ERGKDYLILS  KAIQKREGKL  RAVALYNRSN  TDQQIRVDFD  KLYLSGDVRV360
RDLWNHQEMG  TFTDYYETLV  PAHGTALIRL  EGSKRHDRTC  YEAEYAFMQE  FLPDNKQAAH420
FTPKSGASGE  YIMKNLGNSP  SNWAEFRNVY  ISKGGDYQLK  LTYYSGDKRD  IQIAVNGTEY480
KQSNLYSGTW  DQAATTTIKV  KLRKGYNTIR  LYNSYGWAPD  IDKMEIIKGR  530

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help