CAZyme3D

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Entry ID

Information for CAZyme ID: BAD46779.1

Basic Information

GenBank IDBAD46779.1
FamilyGH2
Sequence Length704
UniProt IDQ650P5(100,100)Download
Average pLDDT?95.77
CAZy50 ID36312
CAZy50 RepNo, QRO23471.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID295405
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/Q650P5.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKLSYLIIV  CLCLCSGVIP  LMARQVTAFN  TGWQFKKGPF  ATDPMRAASQ  WDGKWETVEI60
PHTWNAMDMQ  VQSGSFYDGA  GYYRKTQFFP  HDLEGKRVFL  RFEGVGACAE  VYVNGKLAGT120
HKGGYSAFAC  EIGTALKLGA  ENEIIVKADN  KARPDVIPVN  QNLFGVYGGI  YRPVWLIVTE180
QNNITVTDCA  SPGVYITQKD  VSKKSADITV  KVKLDNAGLQ  PAAVTLENTI  YTQEGRKVGT240
HSRSFDLSPQ  GTQTYLSTFK  LKNPHLWQGR  KDPYLYKVVC  RLMADGKVID  EVVQPLGVRK300
YEIVAGKGFF  LNGEKYPMYG  VTRHQDWWGL  GSALKNEHHD  FDLAAIMDVG  ATTVRFAHYQ360
QSDYLYSRCD  TLGLIIWAEI  PCVNRVTGYE  TENAQSQLRE  LIRQSFNHPS  IYVWGLHNEV420
YQPHEYTAAL  TRSLHDLAKT  EDPDRYTVSV  NGYGHMDHPV  NLNADIQGMN  RYFGWYEKKI480
QDIKPWVEQL  EKDYPYQKLM  LTEYGADANL  AHQTEYLGDA  LNWGKPFYPE  TFQTKTHEYQ540
WSIIKDHPYI  IASYLWNMFD  FAVPMWARGG  VPARNMKGLI  TFDRKTKKDS  YFWYKANWSE600
EPVLYLTQRR  NADREKRTTA  VTVYSNIGTP  KVYLNGQELS  GIRNGYTDVH  YVFDNVSLAD660
GKNILKAVVS  TKGKEYTDEI  EWNYSGEKNR  EIDSYENKNE  HSGF704

Predicted 3D structure by AlphaFold2 with pLDDT = 95.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(23-603)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help