CAZyme3D

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Entry ID

Information for CAZyme ID: BAD44251.1

Basic Information

GenBank IDBAD44251.1
FamilyCBM18, GH19
Sequence Length273
UniProt IDQ9M2U5(100,100)Download
Average pLDDT?90.20
CAZy50 ID66102
CAZy50 RepNo, WFQ81615.1
Structure Cluster-
EC Number(s)3.2.1.14
Substrates(s)chitin

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLTPTISKSI  SLVTILLVLQ  AFSNTTKAQN  CGCSSELCCS  QFGFCGNTSD  YCGVGCQQGP60
CFAPPPANGV  SVAEIVTQEF  FNGIISQAAS  SCAGNRFYSR  GAFLEALDSY  SRFGRVGSTD120
DSRREIAAFF  AHVTHETGHF  CYIEEIDGAS  KDYCDENATQ  YPCNPNKGYY  GRGPIQLSWN180
FNYGPAGTAI  GFDGLNAPET  VATDPVISFK  TALWYWTNRV  QPVISQGFGA  TIRAINGALE240
CDGANTATVQ  ARVRYYTDYC  RQLGVDPGNN  LTC273

Predicted 3D structure by AlphaFold2 with pLDDT = 90.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(27-61)+GH19(72-273)

MLTPTISKSI  SLVTILLVLQ  AFSNTTKAQN  CGCSSELCCS  QFGFCGNTSD  YCGVGCQQGP60
CFAPPPANGV  SVAEIVTQEF  FNGIISQAAS  SCAGNRFYSR  GAFLEALDSY  SRFGRVGSTD120
DSRREIAAFF  AHVTHETGHF  CYIEEIDGAS  KDYCDENATQ  YPCNPNKGYY  GRGPIQLSWN180
FNYGPAGTAI  GFDGLNAPET  VATDPVISFK  TALWYWTNRV  QPVISQGFGA  TIRAINGALE240
CDGANTATVQ  ARVRYYTDYC  RQLGVDPGNN  LTC273

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help