CAZyme3D

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Entry ID

Information for CAZyme ID: BAC45908.1

Basic Information

GenBank IDBAC45908.1
FamilyGH102
Sequence Length494
UniProt IDQ89WN5(100,100)Download
Average pLDDT?79.61
CAZy50 ID48979
CAZy50 RepNo, QUS37599.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID224911
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium diazoefficiens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLSSFSLGAE  AARRHYRSHH  HHLPQLPATP  PRALPYPQLP  LPFEISGAQY  LPLAWADVKG60
WSDDDHLAAY  KTFRASCRSI  NAQTVAPEPK  SEYKALGASL  SEPCRAAKSL  ELSDDAKAKT120
FFEENFAPLR  ISRLGEPDGF  VTGYYEPVLE  GSRTQTDVYN  VPVYRRPSNL  FVRGYKQDSV180
SLPNKGPVYR  KIGRRKLVPY  YDRGEIEDGK  IAGRGLEIAW  LKDPTDLLFA  QIQGSARIKF240
DDGTTLRLNY  DAYNGYPYTA  VGRILIERGI  IPKEEMSMQK  IREWMAQNPD  GAKELRRQNR300
AYIFFREVNL  SDKDEAVGAQ  GIPLTAGRSI  AVDKSLHVYG  TPFFIEGELP  IDSERSKTPF360
HRLMIAQDTG  SAIIGPARAD  LYFGAGADAG  RVSGRLRHPM  HFVMLVPKSL  DPTPRAARLP420
VPDPRPSEKI  AKLFPQTEPA  KDQAKPAAPA  AAVAPGKGET  VAVASPVPLP  VPRPVIEPVQ480
ELRRPAKNRP  HRQQ494

Predicted 3D structure by AlphaFold2 with pLDDT = 79.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(149-306)

MLSSFSLGAE  AARRHYRSHH  HHLPQLPATP  PRALPYPQLP  LPFEISGAQY  LPLAWADVKG60
WSDDDHLAAY  KTFRASCRSI  NAQTVAPEPK  SEYKALGASL  SEPCRAAKSL  ELSDDAKAKT120
FFEENFAPLR  ISRLGEPDGF  VTGYYEPVLE  GSRTQTDVYN  VPVYRRPSNL  FVRGYKQDSV180
SLPNKGPVYR  KIGRRKLVPY  YDRGEIEDGK  IAGRGLEIAW  LKDPTDLLFA  QIQGSARIKF240
DDGTTLRLNY  DAYNGYPYTA  VGRILIERGI  IPKEEMSMQK  IREWMAQNPD  GAKELRRQNR300
AYIFFREVNL  SDKDEAVGAQ  GIPLTAGRSI  AVDKSLHVYG  TPFFIEGELP  IDSERSKTPF360
HRLMIAQDTG  SAIIGPARAD  LYFGAGADAG  RVSGRLRHPM  HFVMLVPKSL  DPTPRAARLP420
VPDPRPSEKI  AKLFPQTEPA  KDQAKPAAPA  AAVAPGKGET  VAVASPVPLP  VPRPVIEPVQ480
ELRRPAKNRP  HRQQ494

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help