CAZyme3D

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Entry ID

Information for CAZyme ID: BAC40237.1

Basic Information

GenBank IDBAC40237.1
FamilyCBM48
Sequence Length270
UniProt IDQ542K0(100,100)Download
Average pLDDT?77.04
CAZy50 ID135389
CAZy50 RepNo, AFP62176.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID10090
KingdomEukaryota
PhylumChordata
ClassMammalia
OrderRodentia
FamilyMuridae
GenusMus
SpeciesMus musculus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGNTSSERAA  LERQAGHKTP  RRDSSGGAKD  GDRPKILMDS  PEDADIFHSE  EIKAPEKEEF60
LAWQHDLEAN  DKAPAQARPT  VFRWTGGGKE  VYLSGSFNNW  SKLPLTRSQN  NFVAILDLPE120
GEHQYKFFVD  GQWTHDPSEP  IVTSQLGTVN  NIIQVKKTDF  EVFDALMVDS  QKCSDVSELS180
SSPPGPYHQE  PYMSKPEERF  KAPPILPPHL  LQVILNKDTG  ISCDPALLPE  PNHVMLNHLY240
ALSIKDGVMV  LSATHRYKKK  YVTTLLYKPI  270

Predicted 3D structure by AlphaFold2 with pLDDT = 77.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(84-137)

MGNTSSERAA  LERQAGHKTP  RRDSSGGAKD  GDRPKILMDS  PEDADIFHSE  EIKAPEKEEF60
LAWQHDLEAN  DKAPAQARPT  VFRWTGGGKE  VYLSGSFNNW  SKLPLTRSQN  NFVAILDLPE120
GEHQYKFFVD  GQWTHDPSEP  IVTSQLGTVN  NIIQVKKTDF  EVFDALMVDS  QKCSDVSELS180
SSPPGPYHQE  PYMSKPEERF  KAPPILPPHL  LQVILNKDTG  ISCDPALLPE  PNHVMLNHLY240
ALSIKDGVMV  LSATHRYKKK  YVTTLLYKPI  270

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help