CAZyme3D

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Entry ID

Information for CAZyme ID: BAB60040.1

Basic Information

GenBank IDBAB60040.1
FamilyGT4
Sequence Length353
UniProt IDQ97AB2(100,100)Download
Average pLDDT?93.68
CAZy50 ID127516
CAZy50 RepNo, SIM60869.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID273116
KingdomArchaea
PhylumCandidatus Thermoplasmatota
ClassThermoplasmata
OrderThermoplasmatales
FamilyThermoplasmataceae
GenusThermoplasma
SpeciesThermoplasma volcanium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLLWFAHRD  IKHPKAGGAE  RTIYEVGKRL  SKLNIGVNLV  TVNPGNLLEY  ENVDGIIIYR60
IKGNIRTHLY  VRKMIKKINP  DVIIDDMGHA  VPWFSPWFTD  KRVIVFFRHL  HAKSLPGQVN120
FFLAKIITLV  EKLYPIIYKN  NIFVTESDTS  ENDLIDLGIK  KDRIVRIPPG  VDLNLFHTGK180
KTDNVQLLYF  GGLRKYKRPE  YAITIYENLY  KKIDNLKLII  VGDGILLNEI  KDKVKGKNYN240
IVFTGKLEYD  ELAKIIRESW  VNLHFSVTEG  WGYSILEASA  SGTPSVAFKV  PGVVDTIIDG300
YNGFLVNNIN  EFTDKILYII  KNEDKFILNS  RKFAENFTWE  KTADLWYKLL  NGN353

Predicted 3D structure by AlphaFold2 with pLDDT = 93.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(178-324)

MKLLWFAHRD  IKHPKAGGAE  RTIYEVGKRL  SKLNIGVNLV  TVNPGNLLEY  ENVDGIIIYR60
IKGNIRTHLY  VRKMIKKINP  DVIIDDMGHA  VPWFSPWFTD  KRVIVFFRHL  HAKSLPGQVN120
FFLAKIITLV  EKLYPIIYKN  NIFVTESDTS  ENDLIDLGIK  KDRIVRIPPG  VDLNLFHTGK180
KTDNVQLLYF  GGLRKYKRPE  YAITIYENLY  KKIDNLKLII  VGDGILLNEI  KDKVKGKNYN240
IVFTGKLEYD  ELAKIIRESW  VNLHFSVTEG  WGYSILEASA  SGTPSVAFKV  PGVVDTIIDG300
YNGFLVNNIN  EFTDKILYII  KNEDKFILNS  RKFAENFTWE  KTADLWYKLL  NGN353

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help