CAZyme3D

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Entry ID

Information for CAZyme ID: BAB54790.1

Basic Information

GenBank IDBAB54790.1
FamilyGT20
Sequence Length275
UniProt IDQ98P65(100,100)Download
Average pLDDT?94.64
CAZy50 ID64127
CAZy50 RepNo, QKC67563.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID266835
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPhyllobacteriaceae
GenusMesorhizobium
SpeciesMesorhizobium japonicum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLGFQTATDV  TNFRRSVRAT  GSTTFDINGA  AKSNGRTVLS  RSFPIGIDVD  AFARMANDAA60
SDVQIDSMRR  QILGLKQIIG  VDRLDYSKGL  PGRIQAFARL  LERHPEHERT  VTYLQIAPPT120
REEVGAYAEI  RAQLEATAGS  VNGKYADLTW  TPIRYIHRTV  PRSRLAGLLR  ASQVGLVAPL180
RDGMNLVAKE  YIAAQDPADP  GVLVLSRFAG  AAEELAHSLI  VNPYVVDEVA  DAIAKALGMP240
LEERIARHGA  LIERIRRNDA  AQWRKSFLEA  LADSS275

Predicted 3D structure by AlphaFold2 with pLDDT = 94.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT20(2-272)

MLGFQTATDV  TNFRRSVRAT  GSTTFDINGA  AKSNGRTVLS  RSFPIGIDVD  AFARMANDAA60
SDVQIDSMRR  QILGLKQIIG  VDRLDYSKGL  PGRIQAFARL  LERHPEHERT  VTYLQIAPPT120
REEVGAYAEI  RAQLEATAGS  VNGKYADLTW  TPIRYIHRTV  PRSRLAGLLR  ASQVGLVAPL180
RDGMNLVAKE  YIAAQDPADP  GVLVLSRFAG  AAEELAHSLI  VNPYVVDEVA  DAIAKALGMP240
LEERIARHGA  LIERIRRNDA  AQWRKSFLEA  LADSS275

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help