CAZyme3D

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Entry ID

Information for CAZyme ID: BAB31822.1

Basic Information

GenBank IDBAB31822.1
FamilyGT13
Sequence Length638
UniProt IDQ91X88(100,100)Download
Average pLDDT?89.75
CAZy50 ID26097
CAZy50 RepNo, UXI17693.1
Structure Cluster-
EC Number(s)2.4.1.-
Substrates(s)-

Taxonomy

Tax ID10090
KingdomEukaryota
PhylumChordata
ClassMammalia
OrderRodentia
FamilyMuridae
GenusMus
SpeciesMus musculus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEGTKEVKDS  NGKIQDHGTG  AVLFLLVTVI  VNIKLILDTR  RAISEANEDP  EPEQDYDEAL60
GRLESPRRRG  SSPRRVLDVE  VYSSRSKVYV  AVDGTTVLED  EAREQGRGIH  VIVLNQATGH120
VMAKRVFDTY  SPHEDEAMVL  FLNMVAPGRV  LICTVKDEGS  FHLKDTAKAL  LRSLGSQAGP180
ALGWRDTWAF  VGRKGGPVLG  EKHSKSPALS  SWGDPVLLKT  DVPLSSAEEA  ECHWADTELN240
RRRRRFCSKV  EGYGSVCSCK  DPTPIEFSPD  PLPDNKVLNV  PVAVIAGNRP  NYLYRMLRSL300
LSAQGVSPQM  ITVFIDGYYE  EPMDVVALFG  LRGIQHTPIS  IKNARVSQHY  KASLTATFNL360
FPEAKFAVVL  EEDLDIAVDF  FSFLSQSIHL  LEEDDSLYCI  SAWNDQGYEH  TAEDPALLYR420
VETMPGLGWV  LRKSLYKEEL  EPKWPTPEKL  WDWDMWMRMP  EQRRGRECII  PDVSRSYHFG480
IVGLNMNGYF  HEAYFKKHKF  NTVPGVQLRN  VDSLKKEAYE  VEIHRLLSEA  EVLDHSKDPC540
EDSFLPDTEG  HTYVAFIRME  TDDDFATWTQ  LAKCLHIWDL  DVRGNHRGLW  RLFRKKNHFL600
VVGVPASPYS  VKKPPSVTPI  FLEPPPKEEG  APGAAEQT638

Predicted 3D structure by AlphaFold2 with pLDDT = 89.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT13(274-582)

MDDWKPSPLI  KPFGARKKRS  WYLTWKYKLT  NQRALRRFCQ  TGAVLFLLVT  VIVNIKLILD60
TRRAISEANE  DPEPEQDYDE  ALGRLESPRR  RGSSPRRVLD  VEVYSSRSKV  YVAVDGTTVL120
EDEAREQGRG  IHVIVLNQAT  GHVMAKRVFD  TYSPHEDEAM  VLFLNMVAPG  RVLICTVKDE180
GSFHLKDTAK  ALLRSLGSQA  GPALGWRDTW  AFVGRKGGPV  LGEKHSKSPA  LSSWGDPVLL240
KTDVPLSSAE  EAECHWADTE  LNRRRRRFCS  KVEGYGSVCS  CKDPTPIEFS  PDPLPDNKVL300
NVPVAVIAGN  RPNYLYRMLR  SLLSAQGVSP  QMITVFIDGY  YEEPMDVVAL  FGLRGIQHTP360
ISIKNARVSQ  HYKASLTATF  NLFPEAKFAV  VLEEDLDIAV  DFFSFLSQSI  HLLEEDDSLY420
CISAWNDQGY  EHTAEDPALL  YRVETMPGLG  WVLRKSLYKE  ELEPKWPTPE  KLWDWDMWMR480
MPEQRRGREC  IIPDVSRSYH  FGIVGLNMNG  YFHEAYFKKH  KFNTVPGVQL  RNVDSLKKEA540
YEVEIHRLLS  EAEVLDHSKD  PCEDSFLPDT  EGHTYVAFIR  METDDDFATW  TQLAKCLHIW600
DLDVRGNHRG  LWRLFRKKNH  FLVVGVPASP  YSVKKPPSVT  PIFLEPPPKE  EGAPGAAEQT660
660

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help