CAZyme3D

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Entry ID

Information for CAZyme ID: BAA82813.1

Basic Information

GenBank IDBAA82813.1
FamilyCBM18, GH19
Sequence Length335
UniProt IDP19171(100,100)Download
Average pLDDT?89.30
CAZy50 ID39117
CAZy50 RepNo, WIA22355.1
Structure Cluster-
EC Number(s)3.2.1.14
Substrates(s)chitin

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPPQKENHRT  LNKMKTNLFL  FLIFSLLLSL  SSAEQCGRQA  GGALCPNGLC  CSEFGWCGNT60
EPYCKQPGCQ  SQCTPGGTPP  GPTGDLSGII  SSSQFDDMLK  HRNDAACPAR  GFYTYNAFIT120
AAKSFPGFGT  TGDTATRKKE  VAAFFGQTSH  ETTGGWATAP  DGPYSWGYCF  KQEQNPASDY180
CEPSATWPCA  SGKRYYGRGP  MQLSWNYNYG  LCGRAIGVDL  LNNPDLVAND  AVIAFKAAIW240
FWMTAQPPKP  SCHAVIAGQW  QPSDADRAAG  RLPGYGVITN  IINGGLECGR  GQDGRVADRI300
GFYQRYCNIF  GVNPGGNLDC  YNQRSFVNGL  LEAAI335

Predicted 3D structure by AlphaFold2 with pLDDT = 89.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(35-73)+GH19(88-320)

MPPQKENHRT  LNKMKTNLFL  FLIFSLLLSL  SSAEQCGRQA  GGALCPNGLC  CSEFGWCGNT60
EPYCKQPGCQ  SQCTPGGTPP  GPTGDLSGII  SSSQFDDMLK  HRNDAACPAR  GFYTYNAFIT120
AAKSFPGFGT  TGDTATRKKE  VAAFFGQTSH  ETTGGWATAP  DGPYSWGYCF  KQEQNPASDY180
CEPSATWPCA  SGKRYYGRGP  MQLSWNYNYG  LCGRAIGVDL  LNNPDLVAND  AVIAFKAAIW240
FWMTAQPPKP  SCHAVIAGQW  QPSDADRAAG  RLPGYGVITN  IINGGLECGR  GQDGRVADRI300
GFYQRYCNIF  GVNPGGNLDC  YNQRSFVNGL  LEAAI335

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help