CAZyme3D

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Entry ID

Information for CAZyme ID: AZS18411.1

Basic Information

GenBank IDAZS18411.1
FamilyGH18
Sequence Length675
UniProt IDA0A3Q9IDH6(100,100)Download
Average pLDDT?91.90
CAZy50 ID28914
CAZy50 RepNo, SYX81820.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2707005
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus lutimineralis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVFTAVPLTA  LGAAPWEPNT  TYKTGDIVTY  GTDTYQCVQG  HTSLVGWEPP  NVPALWSKQS60
SPADTQPPTA  PTNVIASNVT  SSTVTLTWTA  STDNVGVTGY  DVYNGSTIAG  SSATTSYTVT120
GLSASTAYTF  TVTAKDAAGN  VSAASAPVNV  TTGAPVVDTE  PPTAPNNLTA  PTVTTSSVSL180
SWTASTDNIG  VTGYDIYNGT  TLAGSSNTTS  YTVTGLTANT  SYTFIVKAKD  AAGNVSPASN240
ALTVTTLSQN  STQYEIIGYF  PSWAAYDTPS  FTPANIDPTK  VTVINYAFLD  ICWNGKHGNP300
SKSTDNPNPN  TWTCQNGDGT  ASNAPNGSIV  LGDPFTDGTA  DGGYNQLVTI  RQLKNTNPNL360
KLFASVGGWT  WSNQFSNTAN  DPVTRSNFAT  SAVNFLRQYQ  FDGIDIDWEY  PNSIGVPCAS420
GQTCQRTADK  ANYVLLLQTL  RQALDTAGQQ  DGKHYYITIA  SSANSSFLAD  AGGTNNWLSN480
AVQYLDWINI  MTYDYYGPWD  ATSGIVSPLY  NDPANTNGNS  QFNINSTVTN  YLNKSIPANK540
LTVGEPFYGY  GWKGCNAGPN  NNGLYQSCNG  EATGGSDGST  YDFAFMQNTG  LLSADSSGKY600
TVAGQGYTRY  WNSVTQTPFL  YNPSTKIFIT  YDDEQSIHLK  NEFIKTKGLR  GAMFWELNAD660
RNRTLQSVVS  NDLPH675

Predicted 3D structure by AlphaFold2 with pLDDT = 91.90 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM12(15-47)+GH18(253-668)

MVFTAVPLTA  LGAAPWEPNT  TYKTGDIVTY  GTDTYQCVQG  HTSLVGWEPP  NVPALWSKQS60
SPADTQPPTA  PTNVIASNVT  SSTVTLTWTA  STDNVGVTGY  DVYNGSTIAG  SSATTSYTVT120
GLSASTAYTF  TVTAKDAAGN  VSAASAPVNV  TTGAPVVDTE  PPTAPNNLTA  PTVTTSSVSL180
SWTASTDNIG  VTGYDIYNGT  TLAGSSNTTS  YTVTGLTANT  SYTFIVKAKD  AAGNVSPASN240
ALTVTTLSQN  STQYEIIGYF  PSWAAYDTPS  FTPANIDPTK  VTVINYAFLD  ICWNGKHGNP300
SKSTDNPNPN  TWTCQNGDGT  ASNAPNGSIV  LGDPFTDGTA  DGGYNQLVTI  RQLKNTNPNL360
KLFASVGGWT  WSNQFSNTAN  DPVTRSNFAT  SAVNFLRQYQ  FDGIDIDWEY  PNSIGVPCAS420
GQTCQRTADK  ANYVLLLQTL  RQALDTAGQQ  DGKHYYITIA  SSANSSFLAD  AGGTNNWLSN480
AVQYLDWINI  MTYDYYGPWD  ATSGIVSPLY  NDPANTNGNS  QFNINSTVTN  YLNKSIPANK540
LTVGEPFYGY  GWKGCNAGPN  NNGLYQSCNG  EATGGSDGST  YDFAFMQNTG  LLSADSSGKY600
TVAGQGYTRY  WNSVTQTPFL  YNPSTKIFIT  YDDEQSIHLK  NEFIKTKGLR  GAMFWELNAD660
RNRTLQSVVS  NDLPH675

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help