CAZyme3D

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Entry ID

Information for CAZyme ID: AZO22477.1

Basic Information

GenBank IDAZO22477.1
FamilyGH51
Sequence Length501
UniProt IDA0A3Q8YF83(100,100)Download
Average pLDDT?98.00
CAZy50 ID53367
CAZy50 RepNo, CCE98600.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2493672
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPhyllobacteriaceae
GenusMesorhizobium
SpeciesMesorhizobium sp. M1E.F.Ca.ET.045.02.1.1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKARVTANAA  YAVADIDKRL  YGSFLEHLGR  AVYTGIYEPG  HPQADAQGMR  KDVIELVRAL60
DTPICRYPGG  NFVSAYNWED  GIGPKENRPR  RLDLAWRTTE  PNLVGIHEFA  DWAEKAGTEM120
MLAVNLGSRG  LDEARAFVEY  VNHPSGSYWS  DLRAKNGRAQ  PWNCRLWCLG  NEMDGPWQVG180
HKSAEEYGHL  ANETAKALRG  LDPTVELVVC  GSSHSNMPTY  PQWEATVLEA  TYEQVDYISL240
HMYFENYEKN  TAEYLALPAK  LDRYIGTVAG  IIDYVKAKTR  SKRDVKISFD  EWNVWYHQRK300
RDAERMRGWD  WPEAPRLLED  IYNFEDVLQV  GCIINTFIRR  SDIVRIACIA  QLVNVIAPIM360
TDPGGTAWRQ  TIYWPFMLAS  RHGRGTALQL  AVEVPTYDAA  AADKVPWLDI  AGVHDSNAGT420
LTFFAINRHG  SETIEADVAL  ERFAAKSIEH  TIIRHDDLEA  CNTKDAPDNV  SPVKGNGAAL480
SGKGMRLTLP  PHSYSMVRVT  L501

Predicted 3D structure by AlphaFold2 with pLDDT = 98.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH51(2-499)

MKARVTANAA  YAVADIDKRL  YGSFLEHLGR  AVYTGIYEPG  HPQADAQGMR  KDVIELVRAL60
DTPICRYPGG  NFVSAYNWED  GIGPKENRPR  RLDLAWRTTE  PNLVGIHEFA  DWAEKAGTEM120
MLAVNLGSRG  LDEARAFVEY  VNHPSGSYWS  DLRAKNGRAQ  PWNCRLWCLG  NEMDGPWQVG180
HKSAEEYGHL  ANETAKALRG  LDPTVELVVC  GSSHSNMPTY  PQWEATVLEA  TYEQVDYISL240
HMYFENYEKN  TAEYLALPAK  LDRYIGTVAG  IIDYVKAKTR  SKRDVKISFD  EWNVWYHQRK300
RDAERMRGWD  WPEAPRLLED  IYNFEDVLQV  GCIINTFIRR  SDIVRIACIA  QLVNVIAPIM360
TDPGGTAWRQ  TIYWPFMLAS  RHGRGTALQL  AVEVPTYDAA  AADKVPWLDI  AGVHDSNAGT420
LTFFAINRHG  SETIEADVAL  ERFAAKSIEH  TIIRHDDLEA  CNTKDAPDNV  SPVKGNGAAL480
SGKGMRLTLP  PHSYSMVRVT  L501

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help