CAZyme3D

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Entry ID

Information for CAZyme ID: AZI59854.1

Basic Information

GenBank IDAZI59854.1
FamilyGT89
Sequence Length639
UniProt IDA0A3G8ZZY0(100,100)Download
Average pLDDT?90.75
CAZy50 ID41722
CAZy50 RepNo, AQA25910.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2490853
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus sp. NJ-530

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSLSTSSEPR  TEADPHVDTA  ANRTTLSRGV  FLGGVVLAAA  LMFWGAWERR  WIADDGLIVL60
RTVRNLLAGN  GPVFNAGERV  EANTSTAWTY  IVYAFSWLTQ  VRLEYVVLTI  ALVLSTAAVV120
LAMLGTGRLY  RGVRPSAGGT  ILLVPAGVLV  YIAVPPARDF  ATSGLETCLV  IFWIALLWVL180
LVRWAQASTP  STASILTLSF  VAGLGPLVRP  EMAIPGAAAL  MMIVLSAGLT  WKIRTLIVVV240
AGLVPVAYQI  WRMGYYALPY  PNTAVSKDAG  GAKWAQGFAY  LWNLVGPYLL  WLPLLFLLIG300
ALLLVWRSRA  DTPTATADQP  ARPLWQRFQQ  FLRTPRAIVT  FILGSGLILG  IYSLRVGGDF360
MHGRVLLPVL  FCLLIPVAVI  PLRVPARAAF  GSNRDTAIFG  VSAVLWIGTI  IWAFFAANTT420
GMPEGSVVGR  SGIVDERAFY  ALNTGHKHPI  LAEDYLDYPR  MRAMVETIAR  TPEGGLLLPS480
ASYDSWFVVP  PPGPIEEPAE  HVVFFLNLGM  TSMNVGLDVR  VLDQMGLAYP  LAAHTERLED540
GRIGHDKNLY  PDWVVADTGM  IDVRPWLPFF  LDEDWVADAK  QAITCPETQE  LLTSYRSELT600
WARFKQNFQQ  AFDFAKYRFD  RVPAYELERC  GLVPPESPR639

Predicted 3D structure by AlphaFold2 with pLDDT = 90.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT89(31-632)

MSLSTSSEPR  TEADPHVDTA  ANRTTLSRGV  FLGGVVLAAA  LMFWGAWERR  WIADDGLIVL60
RTVRNLLAGN  GPVFNAGERV  EANTSTAWTY  IVYAFSWLTQ  VRLEYVVLTI  ALVLSTAAVV120
LAMLGTGRLY  RGVRPSAGGT  ILLVPAGVLV  YIAVPPARDF  ATSGLETCLV  IFWIALLWVL180
LVRWAQASTP  STASILTLSF  VAGLGPLVRP  EMAIPGAAAL  MMIVLSAGLT  WKIRTLIVVV240
AGLVPVAYQI  WRMGYYALPY  PNTAVSKDAG  GAKWAQGFAY  LWNLVGPYLL  WLPLLFLLIG300
ALLLVWRSRA  DTPTATADQP  ARPLWQRFQQ  FLRTPRAIVT  FILGSGLILG  IYSLRVGGDF360
MHGRVLLPVL  FCLLIPVAVI  PLRVPARAAF  GSNRDTAIFG  VSAVLWIGTI  IWAFFAANTT420
GMPEGSVVGR  SGIVDERAFY  ALNTGHKHPI  LAEDYLDYPR  MRAMVETIAR  TPEGGLLLPS480
ASYDSWFVVP  PPGPIEEPAE  HVVFFLNLGM  TSMNVGLDVR  VLDQMGLAYP  LAAHTERLED540
GRIGHDKNLY  PDWVVADTGM  IDVRPWLPFF  LDEDWVADAK  QAITCPETQE  LLTSYRSELT600
WARFKQNFQQ  AFDFAKYRFD  RVPAYELERC  GLVPPESPR639

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help