CAZyme3D

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Entry ID

Information for CAZyme ID: AZG16507.1

Basic Information

GenBank IDAZG16507.1
FamilyGH13_16
Sequence Length1126
UniProt IDA0A3G8H7I2(100,100)Download
Average pLDDT?88.29
CAZy50 ID6873
CAZy50 RepNo, ALD93392.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID82633
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusCupriavidus
SpeciesCupriavidus pauculus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRLSERANA  ALLTADPLWY  KDAVIYQLHI  KSFYDANGDG  VGDFAGLLAK  LDYLVNLGVD60
TIWLLPFYPS  PRRDDGYDIA  DYRNVHPDYG  TLAEAKRFVA  AAHARGLRVI  TELVINHTSD120
QHPWFQRARR  AKPGSAARNY  YVWSDNDQKY  AGTRIIFCDT  EKSNWSWDAE  AGAYFWHRFY180
SHQPDLNFDN  PQVLNEVLSV  MRFWLDIGID  GLRLDAVPYL  VEREGTSNEN  LPETHEVIRK240
IRRHLDERYP  GRMLLAEANM  WPEDAQQYFG  GASGGGTADT  TGAASPDGGI  AGDECHMAFH300
FPLMPRMYMA  IAREDRFPIT  DIMRQTPEVP  PNCQWAIFLR  NHDELTLEMV  TSSERDYLWE360
VYASDRRARI  NLGIRRRLAT  LMERDRRRIE  LMNSLLFSMP  GTPVIYYGDE  IGMGDNIHLG420
DRDGVRTPMQ  WSPDRNGGFS  SADPERLVLP  PLQGPLYGYE  AVNVEAQTRD  PHSQLNWMRR480
MLALRRQHRA  FGRGTLRFLF  PGNRKILAYL  REYENEHILC  VANLSRAPQA  VELDLSQFNG540
RVPVEMLGAT  PFPAIGQLTY  LLTLPPYGFY  WFVLSEDAQP  PSWHVNAPEQ  MVDQVTLVLQ600
NVGGRSELTE  SARRALTTEV  LPNYLARRRW  FASKGERIER  VNVAYAWPLA  KIGNTEEVWH660
CEVEVQLPGR  TECYQLPVAL  LWDRENTEGM  PQLVHGLSMA  RVRRGPRVGV  ATDGFVVEAY720
ARAVVQAMRD  RTSADVSHGT  IHFLPEPGLA  DAPLESEPVQ  WMSAEQSNSS  LAYGNTGVLK780
LVRKVAGGIH  PEAEMTRYLT  SNGYRHSAAL  LGEVVRTGAD  GTPHTLMLLQ  GYILNQGDGW840
DWTLDYLSRS  IDDALPLTDG  DDEFGEALTG  YATMVGTLGR  RLAELHAVLA  RETDEEAFTP900
VAATDAQASD  WAEEAMKSLD  EAVGLLEARR  ETASGDFARD  IETLLAARDK  LPKLVARLAA960
AAPGSLQTRI  HGDFHLGQVL  IAQNDTYLVD  FEGEPRQPLA  FRRRKTSPLR  DVAGLLRSID1020
YAAATVGTDR  QERTHAQLPP  AQADRRAALL  DRFRTTAGEA  FLNCYQQSMA  SAAQPWATPE1080
QLQPLLDLFL  LERAAYEVGY  EAANRVAWID  LPTSGLARLV  RKLTGD1126

Predicted 3D structure by AlphaFold2 with pLDDT = 88.29 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_16(42-415)

MKRLSERANA  ALLTADPLWY  KDAVIYQLHI  KSFYDANGDG  VGDFAGLLAK  LDYLVNLGVD60
TIWLLPFYPS  PRRDDGYDIA  DYRNVHPDYG  TLAEAKRFVA  AAHARGLRVI  TELVINHTSD120
QHPWFQRARR  AKPGSAARNY  YVWSDNDQKY  AGTRIIFCDT  EKSNWSWDAE  AGAYFWHRFY180
SHQPDLNFDN  PQVLNEVLSV  MRFWLDIGID  GLRLDAVPYL  VEREGTSNEN  LPETHEVIRK240
IRRHLDERYP  GRMLLAEANM  WPEDAQQYFG  GASGGGTADT  TGAASPDGGI  AGDECHMAFH300
FPLMPRMYMA  IAREDRFPIT  DIMRQTPEVP  PNCQWAIFLR  NHDELTLEMV  TSSERDYLWE360
VYASDRRARI  NLGIRRRLAT  LMERDRRRIE  LMNSLLFSMP  GTPVIYYGDE  IGMGDNIHLG420
DRDGVRTPMQ  WSPDRNGGFS  SADPERLVLP  PLQGPLYGYE  AVNVEAQTRD  PHSQLNWMRR480
MLALRRQHRA  FGRGTLRFLF  PGNRKILAYL  REYENEHILC  VANLSRAPQA  VELDLSQFNG540
RVPVEMLGAT  PFPAIGQLTY  LLTLPPYGFY  WFVLSEDAQP  PSWHVNAPEQ  MVDQVTLVLQ600
NVGGRSELTE  SARRALTTEV  LPNYLARRRW  FASKGERIER  VNVAYAWPLA  KIGNTEEVWH660
CEVEVQLPGR  TECYQLPVAL  LWDRENTEGM  PQLVHGLSMA  RVRRGPRVGV  ATDGFVVEAY720
ARAVVQAMRD  RTSADVSHGT  IHFLPEPGLA  DAPLESEPVQ  WMSAEQSNSS  LAYGNTGVLK780
LVRKVAGGIH  PEAEMTRYLT  SNGYRHSAAL  LGEVVRTGAD  GTPHTLMLLQ  GYILNQGDGW840
DWTLDYLSRS  IDDALPLTDG  DDEFGEALTG  YATMVGTLGR  RLAELHAVLA  RETDEEAFTP900
VAATDAQASD  WAEEAMKSLD  EAVGLLEARR  ETASGDFARD  IETLLAARDK  LPKLVARLAA960
AAPGSLQTRI  HGDFHLGQVL  IAQNDTYLVD  FEGEPRQPLA  FRRRKTSPLR  DVAGLLRSID1020
YAAATVGTDR  QERTHAQLPP  AQADRRAALL  DRFRTTAGEA  FLNCYQQSMA  SAAQPWATPE1080
QLQPLLDLFL  LERAAYEVGY  EAANRVAWID  LPTSGLARLV  RKLTGD1126

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help