CAZyme3D

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Entry ID

Information for CAZyme ID: AYV26526.1

Basic Information

GenBank IDAYV26526.1
FamilyCBM13, GH27
Sequence Length562
UniProt IDA0A3G4VNW9(100,100)Download
Average pLDDT?91.42
CAZy50 ID55944
CAZy50 RepNo, ACU73502.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1522758
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. ADI95-16

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPPRLRASLP  CLTAVALFAL  SLAAAPAPAA  AEPTAGSDTP  LALTPPMGWN  NWAHYMCDID60
EAKVVANADA  LVRTGLAAKG  YDTVTVDDCW  MRKSRDAGGG  LVTDTARFPH  GMAWLGEYLH120
AKGLKFGIYE  DAGSLTCEKY  PGSGSPAGGG  ADHYDQDARL  FASWKVDYVK  MDGCNLWVPP180
GKTKEQAYRD  AYGSVARALR  ATGRDMVLSA  SAPAYFQQGE  WGGSDWHKVL  GWVGETGQLW240
REGKDIKVYQ  PAAPGASRWS  SVMGNYGYNR  WLGRYAGPGN  WNDPDFLIAG  APGLTAAESR300
SQVGLWAMMA  APFILSSDVS  GLTPAGVAAL  GNADLIALDQ  DPMGRQGAVV  SSNATFEVLV360
RPLANGDRAV  AVLNRSGSAR  DISVPLADIG  LDSCTVNAKD  LWSGARTDVS  ASLTGKLAAH420
DTAVWRLRPR  GCAEAVPTGQ  VNGAGARCAD  GANTTGVGAV  VMAACTAGAD  QRWTVGRGDA480
SLRLAGECLS  AGEDGAVELA  DCAPGEPGQS  WTHRRDGALV  EAVSGLCLTA  PAAAATPDAP540
AERLRLTACG  DHRVDQAWSL  PV562

Predicted 3D structure by AlphaFold2 with pLDDT = 91.42 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH27(151-406)+CBM13(441-559)

MPPRLRASLP  CLTAVALFAL  SLAAAPAPAA  AEPTAGSDTP  LALTPPMGWN  NWAHYMCDID60
EAKVVANADA  LVRTGLAAKG  YDTVTVDDCW  MRKSRDAGGG  LVTDTARFPH  GMAWLGEYLH120
AKGLKFGIYE  DAGSLTCEKY  PGSGSPAGGG  ADHYDQDARL  FASWKVDYVK  MDGCNLWVPP180
GKTKEQAYRD  AYGSVARALR  ATGRDMVLSA  SAPAYFQQGE  WGGSDWHKVL  GWVGETGQLW240
REGKDIKVYQ  PAAPGASRWS  SVMGNYGYNR  WLGRYAGPGN  WNDPDFLIAG  APGLTAAESR300
SQVGLWAMMA  APFILSSDVS  GLTPAGVAAL  GNADLIALDQ  DPMGRQGAVV  SSNATFEVLV360
RPLANGDRAV  AVLNRSGSAR  DISVPLADIG  LDSCTVNAKD  LWSGARTDVS  ASLTGKLAAH420
DTAVWRLRPR  GCAEAVPTGQ  VNGAGARCAD  GANTTGVGAV  VMAACTAGAD  QRWTVGRGDA480
SLRLAGECLS  AGEDGAVELA  DCAPGEPGQS  WTHRRDGALV  EAVSGLCLTA  PAAAATPDAP540
AERLRLTACG  DHRVDQAWSL  PV562

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help