Information for CAZyme ID: AYV20839.1
Basic Information
| GenBank ID | AYV20839.1 |
| Family | CBM5, GH18 |
| Sequence Length | 841 |
| UniProt ID | A0A3G4V946(100,100) |
| Average pLDDT? | 92.28 |
| CAZy50 ID | 20464 |
| CAZy50 Rep | No, WDE07201.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 689 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio mediterranei |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKNLLLGVSA VALAVSQNVN AAPAKPSIDV WGSNNLQFSK IQLAMETTSG YDQMVQYNDL | 60 |
| AEIKITFNQW SGTTGDTYNI YFDGNKVATG PITGSQTTAT FGYGQGGLYQ MQVEACDATG | 120 |
| CSKSAPMELV VADTDGSHLA PLTMNIDPNN KSYNTDPNMV VGTYFVEWGI YGRDYTVDNI | 180 |
| PADNLTHIIY GFIPICGPNE SVKSVGGNSF NALQTACKGM QDFEVVIHDP WAAYQKSFTQ | 240 |
| AGHDYNTPIK GNYAMLMALK QRNPDLKILP SIGGWTLSDP FYSFTDKANR DKFVASVKRF | 300 |
| LNTWKFYDGV DIDWEYPGGD GAAPDLGDPV NDGPAYIDLM SELRAMLDEL EAETGREYEL | 360 |
| TSAIGVGHDK IEDVDYGKAI PYMDYIFAMT YDFYGGWNNV PGHQAALYCG NFMRPGQCDG | 420 |
| TGVDAEGIPY KGPAYTADNG IQLLLAQGVP ANKLVLGAAM YGRGWTGVTP DTLTDPTDPM | 480 |
| TGVATGKLKG STAQGVWEDG VIDYKGIKAY MLGPDNTGVN GFEYGYDAMA EAAYVWNQTT | 540 |
| GDLITFDDDR SVKAKGAYVQ SLGLAGLFSW EIDADNGDIL NAMHESLAGG TPSNRAPFAS | 600 |
| AGADQSVQGP ATVILDASAS RDSDGSIVSY SWVQTGGDAV VLVGSDTVQA SFDAQEVTAT | 660 |
| QTYQFTVTVT DNEGATATDV VMINVTPKVT TPDNTAPNAV ITGPTTASAN EAVVLDASAS | 720 |
| TDAENDMLSF SWQTPNGLDV SVLGSSVIFS APSVSADTSY IFTVTVSDGS LSTSQTHTVT | 780 |
| VSADGPIGGT CEDNWDAAAV YTGGDQVIYQ GQNYKAKWWT QGEDPTKTGE WGVWENTGAC | 840 |
| Q | 841 |
Predicted 3D structure by AlphaFold2 with pLDDT = 92.28 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH18(159-578)+CBM5(793-831)
| MKNLLLGVSA VALAVSQNVN AAPAKPSIDV WGSNNLQFSK IQLAMETTSG YDQMVQYNDL | 60 |
| AEIKITFNQW SGTTGDTYNI YFDGNKVATG PITGSQTTAT FGYGQGGLYQ MQVEACDATG | 120 |
| CSKSAPMELV VADTDGSHLA PLTMNIDPNN KSYNTDPNMV VGTYFVEWGI YGRDYTVDNI | 180 |
| PADNLTHIIY GFIPICGPNE SVKSVGGNSF NALQTACKGM QDFEVVIHDP WAAYQKSFTQ | 240 |
| AGHDYNTPIK GNYAMLMALK QRNPDLKILP SIGGWTLSDP FYSFTDKANR DKFVASVKRF | 300 |
| LNTWKFYDGV DIDWEYPGGD GAAPDLGDPV NDGPAYIDLM SELRAMLDEL EAETGREYEL | 360 |
| TSAIGVGHDK IEDVDYGKAI PYMDYIFAMT YDFYGGWNNV PGHQAALYCG NFMRPGQCDG | 420 |
| TGVDAEGIPY KGPAYTADNG IQLLLAQGVP ANKLVLGAAM YGRGWTGVTP DTLTDPTDPM | 480 |
| TGVATGKLKG STAQGVWEDG VIDYKGIKAY MLGPDNTGVN GFEYGYDAMA EAAYVWNQTT | 540 |
| GDLITFDDDR SVKAKGAYVQ SLGLAGLFSW EIDADNGDIL NAMHESLAGG TPSNRAPFAS | 600 |
| AGADQSVQGP ATVILDASAS RDSDGSIVSY SWVQTGGDAV VLVGSDTVQA SFDAQEVTAT | 660 |
| QTYQFTVTVT DNEGATATDV VMINVTPKVT TPDNTAPNAV ITGPTTASAN EAVVLDASAS | 720 |
| TDAENDMLSF SWQTPNGLDV SVLGSSVIFS APSVSADTSY IFTVTVSDGS LSTSQTHTVT | 780 |
| VSADGPIGGT CEDNWDAAAV YTGGDQVIYQ GQNYKAKWWT QGEDPTKTGE WGVWENTGAC | 840 |
| Q | 841 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.