CAZyme3D

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Entry ID

Information for CAZyme ID: AYQ34615.1

Basic Information

GenBank IDAYQ34615.1
FamilyGH139
Sequence Length764
UniProt IDA0A3G3GT45(100,100)Download
Average pLDDT?94.93
CAZy50 ID25511
CAZy50 RepNo, AGA77967.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2268026
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella sp. SP2

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTLRTHLLLS  VFGWGVCLST  FAQPAKLSNY  NVVWKTPSKN  SSESMPCGGG  DVGLNVWVED60
GDVFFYLSQS  GTFDENNAML  KLGRIRLRLS  PNPFTGPDFK  QELRLQDGGV  YISGGKTRLH120
LWVDVFRSVV  HAELQSDKPV  KVKAAYESWR  YEDRLVQGTA  IRENSYKTPQ  KFDLKTYKDE180
IAFRGNELWF  YHRNRDDVPN  LFDFTVRLEG  MESVKSQLYN  PIKNNTFGGA  VRSRTMRPAG240
ITTGKYLDTD  FKAWNLETSR  PVRAEHLEVV  LNTAPTSTLA  EWENTVVRRQ  QEVTQTQPTA300
LAQTRAWWKQ  FWERSYIFIE  GKDSTISRNY  HLFRYQLGCN  AFGQWPTKFN  GGLFTFDPQF360
VDKKYNHTPD  FRLWGGGTMT  AQNQRLVYFP  MLKSGDFELM  KPQFDFYLRS  QTNAELRSKV420
YWNHNGACFT  EQIENFGLPN  PFEYGYKRPE  GYDAGMEYNA  WLEYQLDTVF  EFCLMMLETE480
RYENRNIEMY  VPFIESCLTF  FDEHYQGLAK  QRGTKAFDEK  GQYVFYPSSA  CETYKMTYNS540
TTVISALKVI  LTRMLELPDR  YLSTSQRQKW  TTMLERLPPL  PLQEIDGHKT  LAPAVAWMRV600
QNSEAPQLYP  VFPWGLYGVG  KPELEVAQNT  YRHDPHVQKY  KSHVGWRQHN  IFAARLGLVE660
EAAELTRSKF  KDADLRFPTF  WGPGFDWTPD  HNWGGSAMIG  LQEMLLQTNG  RKIVLLPAWP720
KDWNATFKLH  APYQTTIEGR  IKNGVIEDLK  VTPASRLSDV  IVSK764

Predicted 3D structure by AlphaFold2 with pLDDT = 94.93 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH139(19-763)

MTLRTHLLLS  VFGWGVCLST  FAQPAKLSNY  NVVWKTPSKN  SSESMPCGGG  DVGLNVWVED60
GDVFFYLSQS  GTFDENNAML  KLGRIRLRLS  PNPFTGPDFK  QELRLQDGGV  YISGGKTRLH120
LWVDVFRSVV  HAELQSDKPV  KVKAAYESWR  YEDRLVQGTA  IRENSYKTPQ  KFDLKTYKDE180
IAFRGNELWF  YHRNRDDVPN  LFDFTVRLEG  MESVKSQLYN  PIKNNTFGGA  VRSRTMRPAG240
ITTGKYLDTD  FKAWNLETSR  PVRAEHLEVV  LNTAPTSTLA  EWENTVVRRQ  QEVTQTQPTA300
LAQTRAWWKQ  FWERSYIFIE  GKDSTISRNY  HLFRYQLGCN  AFGQWPTKFN  GGLFTFDPQF360
VDKKYNHTPD  FRLWGGGTMT  AQNQRLVYFP  MLKSGDFELM  KPQFDFYLRS  QTNAELRSKV420
YWNHNGACFT  EQIENFGLPN  PFEYGYKRPE  GYDAGMEYNA  WLEYQLDTVF  EFCLMMLETE480
RYENRNIEMY  VPFIESCLTF  FDEHYQGLAK  QRGTKAFDEK  GQYVFYPSSA  CETYKMTYNS540
TTVISALKVI  LTRMLELPDR  YLSTSQRQKW  TTMLERLPPL  PLQEIDGHKT  LAPAVAWMRV600
QNSEAPQLYP  VFPWGLYGVG  KPELEVAQNT  YRHDPHVQKY  KSHVGWRQHN  IFAARLGLVE660
EAAELTRSKF  KDADLRFPTF  WGPGFDWTPD  HNWGGSAMIG  LQEMLLQTNG  RKIVLLPAWP720
KDWNATFKLH  APYQTTIEGR  IKNGVIEDLK  VTPASRLSDV  IVSK764

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help