CAZyme3D

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Entry ID

Information for CAZyme ID: AYO76334.1

Basic Information

GenBank IDAYO76334.1
FamilyGT4
Sequence Length342
UniProt IDA0A3G2UPA6(100,100)Download
Average pLDDT?92.94
CAZy50 ID75684
CAZy50 RepNo, QQP87940.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID13690
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingobium
SpeciesSphingobium yanoikuyae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRIAIVTDAW  TPQVNGVVRT  LQTIQAELEH  MGHEVKVISP  DLYGSIPCPT  YPEIRLALVR60
SGVVGQAIAA  FRPDAVHLAT  EGPLCFAARR  WCLRGNVPFT  TAYHTHFPDY  VSQRTGLPAA120
WFWRYIRWFH  GPAQAVLVST  RSVRQQLRAH  GVANVRKWGR  GVDLNTFAGD  LAPSALLADL180
PRPIQLYVGR  VAVEKNLEAF  LASEHPGTKL  IVGDGPARGA  LERAYPDARF  LGAQFGADLA240
AIYAGADVFV  FPSRTDTFGL  VMIEALAAGT  PVAAYPVTGP  IDIVTPETGA  LSERLEDAIA300
AALLCDRAAC  AAYGRSFSWE  RSAQEFLAGL  HPIDPVVMDS  AA342

Predicted 3D structure by AlphaFold2 with pLDDT = 92.94 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(181-303)

MRIAIVTDAW  TPQVNGVVRT  LQTIQAELEH  MGHEVKVISP  DLYGSIPCPT  YPEIRLALVR60
SGVVGQAIAA  FRPDAVHLAT  EGPLCFAARR  WCLRGNVPFT  TAYHTHFPDY  VSQRTGLPAA120
WFWRYIRWFH  GPAQAVLVST  RSVRQQLRAH  GVANVRKWGR  GVDLNTFAGD  LAPSALLADL180
PRPIQLYVGR  VAVEKNLEAF  LASEHPGTKL  IVGDGPARGA  LERAYPDARF  LGAQFGADLA240
AIYAGADVFV  FPSRTDTFGL  VMIEALAAGT  PVAAYPVTGP  IDIVTPETGA  LSERLEDAIA300
AALLCDRAAC  AAYGRSFSWE  RSAQEFLAGL  HPIDPVVMDS  AA342

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help