CAZyme3D

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Entry ID

Information for CAZyme ID: AYN27068.1

Basic Information

GenBank IDAYN27068.1
FamilyGT112
Sequence Length436
UniProt IDA0A3G2ICC6(100,100)Download
Average pLDDT?89.64
CAZy50 ID79553
CAZy50 RepNo, AKL98076.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2479367
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusButtiauxella
SpeciesButtiauxella sp. 3AFRM03

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSNNSTSLHS  VASASASAAS  APQESVPFIL  PPEFPTQTGP  LGIRYDFNDG  ARVWLPQGQW60
HVQIWDADSD  NILFSCDSDE  GWVTSAKKFF  VRFSIRVFRR  GEKEPVLDHT  LDLTGQDVLV120
SFPVGTLGDL  IGWVPYAERF  REQHQCQLEC  TMGPLIIDLF  AASYPDIRFT  EPANYTGRQP180
YASYRVGLYF  QGNLNNQPID  FRMVGLHRTA  GHILGTDPTE  ILPKLSLNAP  RTIPEPYVCI240
ATKASCQAKF  WNNGTGWNEV  VDYLKTQGYR  VLCIDQKATV  GQGFVWNHIP  HGAEDFTGDI300
PLSERVALLQ  HADFFIGLSS  GLSWLAWACR  IPVVLISGFT  LPNCEFSTPY  RVFSPHVCNG360
CWDDVRIDFD  HKDFLWCPRH  KGTERQYECS  RAITGQQVIG  HIRRLQQTHL  RFNNTGDRAS420
ADTAPVHITR  HVKERK436

Predicted 3D structure by AlphaFold2 with pLDDT = 89.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(35-403)

MSNNSTSLHS  VASASASAAS  APQESVPFIL  PPEFPTQTGP  LGIRYDFNDG  ARVWLPQGQW60
HVQIWDADSD  NILFSCDSDE  GWVTSAKKFF  VRFSIRVFRR  GEKEPVLDHT  LDLTGQDVLV120
SFPVGTLGDL  IGWVPYAERF  REQHQCQLEC  TMGPLIIDLF  AASYPDIRFT  EPANYTGRQP180
YASYRVGLYF  QGNLNNQPID  FRMVGLHRTA  GHILGTDPTE  ILPKLSLNAP  RTIPEPYVCI240
ATKASCQAKF  WNNGTGWNEV  VDYLKTQGYR  VLCIDQKATV  GQGFVWNHIP  HGAEDFTGDI300
PLSERVALLQ  HADFFIGLSS  GLSWLAWACR  IPVVLISGFT  LPNCEFSTPY  RVFSPHVCNG360
CWDDVRIDFD  HKDFLWCPRH  KGTERQYECS  RAITGQQVIG  HIRRLQQTHL  RFNNTGDRAS420
ADTAPVHITR  HVKERK436

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help