CAZyme3D

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Entry ID

Information for CAZyme ID: AYM90938.1

Basic Information

GenBank IDAYM90938.1
FamilyGT108
Sequence Length311
UniProt IDA0A3G2FF59(100,100)Download
Average pLDDT?96.35
CAZy50 ID138756
CAZy50 RepNo, AEV20975.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2448483
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusSerratia
SpeciesSerratia sp. 3ACOL1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTNSPASVA  QLIADYHQRT  SGITFTTDRL  EFTGVGDKDV  YNITAPFTSA  GLQVIAGRVE60
ARDSEHSTIV  FFQEQQGKWT  PVENAPTFPL  QDPFFCFIAG  ELIFGGVEIN  PHPEHPGQLI120
WHTVFYRGRD  ILSLNRFACG  PSGMKDIRLC  QIQPGRIGVF  TRPQGNIGGR  GTIGYVEISC180
LEELTPDTIA  NAQLLDRQFN  SDEWGGVNET  HLLSDGTIGL  LAHIACFDQQ  QRRHYYPGVF240
IFNPDTKNYS  PIKIIAARSN  LLPGDAKRPD  LVDVIFPGGL  IALADNRWRL  YVGASDAQAH300
WIDIEDPFIG  I311

Predicted 3D structure by AlphaFold2 with pLDDT = 96.35 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT108(25-308)

MKTNSPASVA  QLIADYHQRT  SGITFTTDRL  EFTGVGDKDV  YNITAPFTSA  GLQVIAGRVE60
ARDSEHSTIV  FFQEQQGKWT  PVENAPTFPL  QDPFFCFIAG  ELIFGGVEIN  PHPEHPGQLI120
WHTVFYRGRD  ILSLNRFACG  PSGMKDIRLC  QIQPGRIGVF  TRPQGNIGGR  GTIGYVEISC180
LEELTPDTIA  NAQLLDRQFN  SDEWGGVNET  HLLSDGTIGL  LAHIACFDQQ  QRRHYYPGVF240
IFNPDTKNYS  PIKIIAARSN  LLPGDAKRPD  LVDVIFPGGL  IALADNRWRL  YVGASDAQAH300
WIDIEDPFIG  I311

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help