CAZyme3D

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Entry ID

Information for CAZyme ID: AYM53253.1

Basic Information

GenBank IDAYM53253.1
FamilyGH55
Sequence Length356
UniProt IDA0A3Q8I2U4(100,100)Download
Average pLDDT?93.61
CAZy50 ID635
CAZy50 RepNo, BCJ99063.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID43
KingdomBacteria
PhylumMyxococcota
ClassMyxococcia
OrderMyxococcales
FamilyArchangiaceae
GenusCystobacter
SpeciesCystobacter fuscus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRRFASTIS  VSAAVAGLCS  VIPGVSLAAP  ISEANTTIFG  PRVYVFDPTM  AGADITGVAN60
SVFSKLESAE  FSTERYALLF  KPGSYNVNFN  VGYYTHVAGL  GQSPDDVTIN  GGVNVNADWD120
NGNATRNFWR  ALENYSVVPA  NGQTQIAVSQ  AAPLRRLHIK  GDLHLFDFDS  NWNAGWASGG180
FLADSVVDGL  VVPASQQQWL  SRNSKWGNWN  NGVWNMVFVG  VNNAPTGQFP  NPPYTVIDRT240
PIIREKPYLY  VNSAGQYAVF  VPALQTNTQG  VSWANGPTPG  QAISIDQFYI  ARPETASAAS300
INSALSQGKH  LLFTPGIYQL  NDTLRVNNAN  TVVLGIGLPT  LIPTSGQPTL  SIADVD356

Predicted 3D structure by AlphaFold2 with pLDDT = 93.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MIRRFASTIS  VSAAVAGLCS  VIPGVSLAAP  ISEANTTIFG  PRVYVFDPTM  AGADITGVAN60
SVFSKLESAE  FSTERYALLF  KPGSYNVNFN  VGYYTHVAGL  GQSPDDVTIN  GGVNVNADWD120
NGNATRNFWR  ALENYSVVPA  NGQTQIAVSQ  AAPLRRLHIK  GDLHLFDFDS  NWNAGWASGG180
FLADSVVDGL  VVPASQQQWL  SRNSKWGNWN  NGVWNMVFVG  VNNAPTGQFP  NPPYTVIDRT240
PIIREKPYLY  VNSAGQYAVF  VPALQTNTQG  VSWANGPTPG  QAISIDQFYI  ARPETASAAS300
INSALSQGKH  LLFTPGIYQL  NDTLRVNNAN  TVVLGIGLPT  LIPTSGQPTL  SIADVD356

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help