CAZyme3D

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Entry ID

Information for CAZyme ID: AYG74621.1

Basic Information

GenBank IDAYG74621.1
FamilyGT92
Sequence Length304
UniProt IDA0A387H1T0(100,100)Download
Average pLDDT?92.85
CAZy50 ID145387
CAZy50 RepNo, QPB18712.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2364272
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. CCGE532

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRWLKPKASD  AKKLTIDPPE  ARAGRHGIAI  AACVKNEARY  IEEWVRFHQA  VGIRHFYIYD60
NGSTDETCTL  LRSLLNEHML  TIIPWAGRMR  DTATSAVLNG  QVITFAHAIL  NFGGHYRWMA120
FIDVDEFLLP  KEAATVEQAL  EAVGDFPNVS  LPWHMFATSG  HETPPDGPLT  LNYTMRGADP180
MTTKENVSNF  KCIVDPCEVT  EVSVHQFQTR  SHGDLTANDA  GKRFTRRARK  SPEFYSNRFL240
QLNHYYTKSR  QELMEKLARG  WAYDSSAAKY  RDKVLSVVKS  IEEDMVEDRS  MIDFIERHHI300
DLGR304

Predicted 3D structure by AlphaFold2 with pLDDT = 92.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT92(36-214)

MRWLKPKASD  AKKLTIDPPE  ARAGRHGIAI  AACVKNEARY  IEEWVRFHQA  VGIRHFYIYD60
NGSTDETCTL  LRSLLNEHML  TIIPWAGRMR  DTATSAVLNG  QVITFAHAIL  NFGGHYRWMA120
FIDVDEFLLP  KEAATVEQAL  EAVGDFPNVS  LPWHMFATSG  HETPPDGPLT  LNYTMRGADP180
MTTKENVSNF  KCIVDPCEVT  EVSVHQFQTR  SHGDLTANDA  GKRFTRRARK  SPEFYSNRFL240
QLNHYYTKSR  QELMEKLARG  WAYDSSAAKY  RDKVLSVVKS  IEEDMVEDRS  MIDFIERHHI300
DLGR304

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help