CAZyme3D

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Entry ID

Information for CAZyme ID: AYE98326.1

Basic Information

GenBank IDAYE98326.1
FamilyGT89
Sequence Length663
UniProt IDA0A386UCP6(100,100)Download
Average pLDDT?88.69
CAZy50 ID38741
CAZy50 RepNo, AEV72545.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1389713
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium paragordonae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVLLLLSASE  RFKALQAAAL  ARRPSVRRVK  WPVFPYTSTV  RVSLWVSVAL  VALLFGWGAW60
QRRWIADDGL  IVLRTVRNLL  AGNGPVFNAG  ERVEANTSTV  WTYLLYVCSW  VGGPLRLEYV120
ALAVALTLSV  LGVVLLMLGT  GRLYAPSLRG  RRAIMLPAGA  LVYIAVPPAR  DFATSGLESG180
LVMAYVGLLW  WMMVCWAQPL  RVRPESPWFV  GALSFVAGCS  VLVRPELALV  GGAALIMMMI240
SARTWRRRGL  IVLAGGLLPV  AYQIFRMGYY  GLLVPGTALA  KDAAGDKWSQ  GLIYLADFNA300
PYSIWIPVVL  LVPLGIVLMA  ARRRPSFMRP  TLAPGYGRLA  RAVQSPTAVV  TWMVVSGLLQ360
ALYWIRQGGD  FMHGRVLLTP  LFCLLAPVAV  IPVVIPDGKD  YSKEAGYWLA  GGVSALWLAV420
AGWSLWAANS  PGMGDDATHV  SYSGIVDERR  FYAQATGRAH  PLTAADYLDY  PRMAAVLVAL480
NNTPDGALLL  PSGNYTQWDL  VPMIPPGSAP  GIPADQKPQH  TVFFTNLGML  GMNVGLDVRV540
IDQIGLANPL  AAHTERLKHG  RIGHDKNLFP  DWVVADGPWV  KWPPGIPAYL  DQQWIAEAEA600
ALKCPATQAV  LNSVRAPMTV  RRFVSNFLHA  YEFTQYRIDR  VPLYELVRCG  LEVPKVPPTP660
PRE663

Predicted 3D structure by AlphaFold2 with pLDDT = 88.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT89(42-652)

MVLLLLSASE  RFKALQAAAL  ARRPSVRRVK  WPVFPYTSTV  RVSLWVSVAL  VALLFGWGAW60
QRRWIADDGL  IVLRTVRNLL  AGNGPVFNAG  ERVEANTSTV  WTYLLYVCSW  VGGPLRLEYV120
ALAVALTLSV  LGVVLLMLGT  GRLYAPSLRG  RRAIMLPAGA  LVYIAVPPAR  DFATSGLESG180
LVMAYVGLLW  WMMVCWAQPL  RVRPESPWFV  GALSFVAGCS  VLVRPELALV  GGAALIMMMI240
SARTWRRRGL  IVLAGGLLPV  AYQIFRMGYY  GLLVPGTALA  KDAAGDKWSQ  GLIYLADFNA300
PYSIWIPVVL  LVPLGIVLMA  ARRRPSFMRP  TLAPGYGRLA  RAVQSPTAVV  TWMVVSGLLQ360
ALYWIRQGGD  FMHGRVLLTP  LFCLLAPVAV  IPVVIPDGKD  YSKEAGYWLA  GGVSALWLAV420
AGWSLWAANS  PGMGDDATHV  SYSGIVDERR  FYAQATGRAH  PLTAADYLDY  PRMAAVLVAL480
NNTPDGALLL  PSGNYTQWDL  VPMIPPGSAP  GIPADQKPQH  TVFFTNLGML  GMNVGLDVRV540
IDQIGLANPL  AAHTERLKHG  RIGHDKNLFP  DWVVADGPWV  KWPPGIPAYL  DQQWIAEAEA600
ALKCPATQAV  LNSVRAPMTV  RRFVSNFLHA  YEFTQYRIDR  VPLYELVRCG  LEVPKVPPTP660
PRE663

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help