CAZyme3D

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Entry ID

Information for CAZyme ID: AYD47656.1

Basic Information

GenBank IDAYD47656.1
FamilyCE19
Sequence Length473
UniProt IDA0A386HQ10(100,100)Download
Average pLDDT?94.29
CAZy50 ID35729
CAZy50 RepNo, UYQ95539.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2341117
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusArachidicoccus
SpeciesArachidicoccus soli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRRVLLISC  IFSACASHSK  AQYQDSDNKY  SMSLDSVLRL  VEQRYHVTIK  YNQEQVAGLT60
VPYAEWRFRD  SAAKTLANVL  APLDMKVNRL  SPTRFKLKDY  EYFRWSIADG  WKELDRIAAQ120
YHDAKSFDLR  RDSLRSELYK  ALQLSPLPAK  PNSKPILTPL  RIYKGYSVQN  IAIEILPGLY180
INGSIYRPLS  IKGKIPVMLS  PDGHWDLQRY  RPDCQIRCAT  LARMGIMAYS  YDLFAWGESL240
LQFKSADHQK  SLSQTIQTLG  AIRILDYVCG  LKEVDTSRVG  ISGGSGGGSH  TALMAALDQR300
IKLSAPVVSI  SSYFYGGCPC  ESGMPIFQCG  GGTDYVELAA  MAAPHPQLIV  SDGSDWTAQM360
PEHDFPYLQK  IYSYYEQQQN  VENVHLANEF  HDYGISKRLA  LYHFVAKFWH  LNLKTIETNG420
KIDESQVTIE  KPNQMYVFGD  HGQLLPKDAV  MGFDNLVKVF  TSAAQRAKLN  QFK473

Predicted 3D structure by AlphaFold2 with pLDDT = 94.29 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE19(120-457)

MIRRVLLISC  IFSACASHSK  AQYQDSDNKY  SMSLDSVLRL  VEQRYHVTIK  YNQEQVAGLT60
VPYAEWRFRD  SAAKTLANVL  APLDMKVNRL  SPTRFKLKDY  EYFRWSIADG  WKELDRIAAQ120
YHDAKSFDLR  RDSLRSELYK  ALQLSPLPAK  PNSKPILTPL  RIYKGYSVQN  IAIEILPGLY180
INGSIYRPLS  IKGKIPVMLS  PDGHWDLQRY  RPDCQIRCAT  LARMGIMAYS  YDLFAWGESL240
LQFKSADHQK  SLSQTIQTLG  AIRILDYVCG  LKEVDTSRVG  ISGGSGGGSH  TALMAALDQR300
IKLSAPVVSI  SSYFYGGCPC  ESGMPIFQCG  GGTDYVELAA  MAAPHPQLIV  SDGSDWTAQM360
PEHDFPYLQK  IYSYYEQQQN  VENVHLANEF  HDYGISKRLA  LYHFVAKFWH  LNLKTIETNG420
KIDESQVTIE  KPNQMYVFGD  HGQLLPKDAV  MGFDNLVKVF  TSAAQRAKLN  QFK473

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help