CAZyme3D

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Entry ID

Information for CAZyme ID: AYD46770.1

Basic Information

GenBank IDAYD46770.1
FamilyGH16_3
Sequence Length273
UniProt IDA0A386HML6(100,100)Download
Average pLDDT?92.74
CAZy50 ID158152
CAZy50 RepNo, UFH34308.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2341117
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusArachidicoccus
SpeciesArachidicoccus soli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKYSTTFFLF  SFLMLFNHSF  GQKKYNRMVW  HEEFNYTGLP  DSTIWNYENG  FVRNQESQYY60
TKARKENAYV  HDGYLEIKAI  KENYPNKFYL  KGSTDWRKKA  PNAAYTSACI  TTKNLHTWRY120
GKIVVRAKLP  MGLGVWPAIW  MLGAEKYKWP  RNGEIDIMEL  IGREPTHIYG  TAHYAADNKS180
GHKSSGGVIS  VNDLSDAFHN  YAVVWNKHTI  KFMVDDSVYH  SFNTSPAKYK  GENPFRKKFY240
LLLNLAMGGS  WGGPIGENVL  PQSFLVDYVR  IYK273

Predicted 3D structure by AlphaFold2 with pLDDT = 92.74 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_3(30-272)

MKYSTTFFLF  SFLMLFNHSF  GQKKYNRMVW  HEEFNYTGLP  DSTIWNYENG  FVRNQESQYY60
TKARKENAYV  HDGYLEIKAI  KENYPNKFYL  KGSTDWRKKA  PNAAYTSACI  TTKNLHTWRY120
GKIVVRAKLP  MGLGVWPAIW  MLGAEKYKWP  RNGEIDIMEL  IGREPTHIYG  TAHYAADNKS180
GHKSSGGVIS  VNDLSDAFHN  YAVVWNKHTI  KFMVDDSVYH  SFNTSPAKYK  GENPFRKKFY240
LLLNLAMGGS  WGGPIGENVL  PQSFLVDYVR  IYK273

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help