CAZyme3D

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Entry ID

Information for CAZyme ID: AYC37719.1

Basic Information

GenBank IDAYC37719.1
FamilyCE12
Sequence Length359
UniProt IDA0A385ZKJ3(100,100)Download
Average pLDDT?90.08
CAZy50 ID114804
CAZy50 RepNo, AGP53491.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID67304
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces griseorubiginosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRFNLAVLA  ALTLSAGLTA  VPAQAHPAQA  HPGHPAQAHP  GRALGIDNCA  GNACHFDVPP60
GTYDVKVLLG  GDAESSTSVS  GETRRSLLPE  TAVAAGERTA  RSFTVNVRTP  EGEPTGPDGT120
PGLDLTLGGT  APALADIRVT  PARHARQIFL  VGDSTVCDQP  GDPYSGWGQQ  LPQYLRKGVS180
VANYADSGES  TVTYLAEPRL  WATVQPLIRR  GDLVLIQLAH  NDKTTDGTTY  RANLETLVAG240
VREKGGNPVL  VTPVVRRWFN  SDGTLNNGTA  LLVNGLGVDH  PAVIRSVAAA  EGVPLIDLTA300
RTKTLVESLG  VEGSKAIYLY  NEKRDNTHTS  VHGATVYAGL  VRDELLAQGL  VPEGAVRVG359

Predicted 3D structure by AlphaFold2 with pLDDT = 90.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE12(147-345)

MRRFNLAVLA  ALTLSAGLTA  VPAQAHPAQA  HPGHPAQAHP  GRALGIDNCA  GNACHFDVPP60
GTYDVKVLLG  GDAESSTSVS  GETRRSLLPE  TAVAAGERTA  RSFTVNVRTP  EGEPTGPDGT120
PGLDLTLGGT  APALADIRVT  PARHARQIFL  VGDSTVCDQP  GDPYSGWGQQ  LPQYLRKGVS180
VANYADSGES  TVTYLAEPRL  WATVQPLIRR  GDLVLIQLAH  NDKTTDGTTY  RANLETLVAG240
VREKGGNPVL  VTPVVRRWFN  SDGTLNNGTA  LLVNGLGVDH  PAVIRSVAAA  EGVPLIDLTA300
RTKTLVESLG  VEGSKAIYLY  NEKRDNTHTS  VHGATVYAGL  VRDELLAQGL  VPEGAVRVG359

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help