CAZyme3D

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Entry ID

Information for CAZyme ID: AYB43012.1

Basic Information

GenBank IDAYB43012.1
FamilyGH88
Sequence Length391
UniProt IDA0A385TK52(100,100)Download
Average pLDDT?96.22
CAZy50 ID24879
CAZy50 RepNo, VEC82708.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1401
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus lautus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEEAIREPLK  YGEATIWTRR  RTEAAIEFVL  DKIDENLDTF  SDRFPSPASR  NHIYEPIGNT60
EWTSSFWTGM  LWLAYEVTGK  TKYRSIAELQ  LHSYKERVEN  RIATETHDLG  FLYSLSCVAA120
YKLTGNEEAR  RIALAAADLL  MERYFEKAGI  IQAWGKLDRP  SQRGRMIIDC  CMNLPLLYWA180
TEETRKPEYR  RAAISHAQQS  ARYLIREDSS  TYHTYYMDVE  SGEPRFGQTS  QGYADHSCWS240
RGQAWAIYGM  PLSYAYSKEE  TRLHDAERVT  NYYLNRLPED  DVCYWDLIFT  EGQEERDSSA300
AAISVCGMLE  LAKRLPLSHP  QRRTYENAAL  RILASLSDRY  TTATLPESNG  ILQHAVYGKP360
LGNGIDECCI  WGDYFYFEAL  VRVFKDWDMY  W391

Predicted 3D structure by AlphaFold2 with pLDDT = 96.22 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH88(58-382)

MEEAIREPLK  YGEATIWTRR  RTEAAIEFVL  DKIDENLDTF  SDRFPSPASR  NHIYEPIGNT60
EWTSSFWTGM  LWLAYEVTGK  TKYRSIAELQ  LHSYKERVEN  RIATETHDLG  FLYSLSCVAA120
YKLTGNEEAR  RIALAAADLL  MERYFEKAGI  IQAWGKLDRP  SQRGRMIIDC  CMNLPLLYWA180
TEETRKPEYR  RAAISHAQQS  ARYLIREDSS  TYHTYYMDVE  SGEPRFGQTS  QGYADHSCWS240
RGQAWAIYGM  PLSYAYSKEE  TRLHDAERVT  NYYLNRLPED  DVCYWDLIFT  EGQEERDSSA300
AAISVCGMLE  LAKRLPLSHP  QRRTYENAAL  RILASLSDRY  TTATLPESNG  ILQHAVYGKP360
LGNGIDECCI  WGDYFYFEAL  VRVFKDWDMY  W391

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help