CAZyme3D

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Entry ID

Information for CAZyme ID: AXX74056.1

Basic Information

GenBank IDAXX74056.1
FamilyGH2
Sequence Length628
UniProt IDA0A347T807(100,100)Download
Average pLDDT?97.08
CAZy50 ID16168
CAZy50 RepNo, QJU20849.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1598
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLimosilactobacillus
SpeciesLimosilactobacillus reuteri

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDADIKWLDE  PETFRINQLP  AHSDHYYYGN  YDEWGHNNSR  FAQNLDGQWQ  FNFAENPRKR60
ENDFYKVDYD  SSIFGTIEVP  SEIELNNYAQ  NNYINTLIPW  EGKIYRRPAY  ALSPDDAQEG120
SFSDGDDNTV  GEYLKHFDLE  PSLRGKQVRI  RFDGVERAMY  VWLNGHFIGY  AEDSFTPSEF180
DLTPYIQDEG  NVLAVEVFKH  STASWIEDQD  MFRFSGIFRS  VNLLAQPLVH  VEDLNIRPIV240
TDNYQDGIFN  VALQLHGEKT  GNVNVRVIDN  DGNTLVNETY  PVDSTVKVQD  QFLENVHLWD300
NHDPYLYQLL  IEIRDDEGNL  IELVPYRFGF  RRIEINKDHV  VLLNGQRLII  NGVNRHEWDA360
KRGRAITMDD  MTSDIQTFKE  NNINAVRTCH  YPDQIPWYYL  CDDNGIYMMA  ENNLESHATW420
QKMGAIEPSY  NVPGSVPQWR  DVVVDRARTN  YETFKNHPSI  LFWSLGNESY  AGDNIVKMNE480
FYKKHDDSRL  VHYEGVCHTP  EYRDRISDVE  SWMYLPPKEV  EEYLKNNPDK  PFMECEYMHD540
MGNSDGGMGS  YISLLDKYPQ  YFGGFIWDFI  DQALLVKDPV  SGQEVMRYGG  DFDDRHSDYE600
FSGDGLMFAD  RTPKPAMQEV  RYYYGLHK628

Predicted 3D structure by AlphaFold2 with pLDDT = 97.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(31-624)

MDADIKWLDE  PETFRINQLP  AHSDHYYYGN  YDEWGHNNSR  FAQNLDGQWQ  FNFAENPRKR60
ENDFYKVDYD  SSIFGTIEVP  SEIELNNYAQ  NNYINTLIPW  EGKIYRRPAY  ALSPDDAQEG120
SFSDGDDNTV  GEYLKHFDLE  PSLRGKQVRI  RFDGVERAMY  VWLNGHFIGY  AEDSFTPSEF180
DLTPYIQDEG  NVLAVEVFKH  STASWIEDQD  MFRFSGIFRS  VNLLAQPLVH  VEDLNIRPIV240
TDNYQDGIFN  VALQLHGEKT  GNVNVRVIDN  DGNTLVNETY  PVDSTVKVQD  QFLENVHLWD300
NHDPYLYQLL  IEIRDDEGNL  IELVPYRFGF  RRIEINKDHV  VLLNGQRLII  NGVNRHEWDA360
KRGRAITMDD  MTSDIQTFKE  NNINAVRTCH  YPDQIPWYYL  CDDNGIYMMA  ENNLESHATW420
QKMGAIEPSY  NVPGSVPQWR  DVVVDRARTN  YETFKNHPSI  LFWSLGNESY  AGDNIVKMNE480
FYKKHDDSRL  VHYEGVCHTP  EYRDRISDVE  SWMYLPPKEV  EEYLKNNPDK  PFMECEYMHD540
MGNSDGGMGS  YISLLDKYPQ  YFGGFIWDFI  DQALLVKDPV  SGQEVMRYGG  DFDDRHSDYE600
FSGDGLMFAD  RTPKPAMQEV  RYYYGLHK628

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help