CAZyme3D

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Entry ID

Information for CAZyme ID: AXT85847.1

Basic Information

GenBank IDAXT85847.1
FamilyGT4
Sequence Length425
UniProt IDA0A3B7DD86(100,100)Download
Average pLDDT?87.44
CAZy50 ID76237
CAZy50 RepNo, QAY61966.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2107713
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusAeromicrobium
SpeciesAeromicrobium sp. A1-2

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRKTKPPLR  AEERPAVAAN  LRVLLVAPTI  DQTDVGEAWV  GYQWGRHLSE  RFDTTVLTYR60
KRDRPSAVPQ  LPRARVVEWV  EPRGLGRAER  LNSLAKPGYV  PFYLRARHWI  RSAQASGERF120
DVGHQPLPVA  MRYPSPLAGL  GIPFVLGPVG  GSLGSPEGFE  DGDTAPWYVD  LRRIDPWRLR180
HDRLLRKTYS  SASVVLGIAP  YVGEALASVP  VRDLKILPET  ALDVLPDGGR  IAHGSTVRLL240
FVGRLVRTKG  AREAIGAVAR  LTTHDVVLDI  VGDGFDRAAC  ETLVTTLGLG  ERVRFHGSRS300
RAEVEEFYRT  ADIFVFPSFR  EPGGNVVFEA  MGHHLPVVTC  DRGGPGAAVD  DSSGMRIPVE360
SPEQMVRDFG  AALELLVTDA  ALRASMGAAA  RARVERIGLW  PAKIEAVADI  YASICREPKA420
PGRST425

Predicted 3D structure by AlphaFold2 with pLDDT = 87.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(239-387)

MNRKTKPPLR  AEERPAVAAN  LRVLLVAPTI  DQTDVGEAWV  GYQWGRHLSE  RFDTTVLTYR60
KRDRPSAVPQ  LPRARVVEWV  EPRGLGRAER  LNSLAKPGYV  PFYLRARHWI  RSAQASGERF120
DVGHQPLPVA  MRYPSPLAGL  GIPFVLGPVG  GSLGSPEGFE  DGDTAPWYVD  LRRIDPWRLR180
HDRLLRKTYS  SASVVLGIAP  YVGEALASVP  VRDLKILPET  ALDVLPDGGR  IAHGSTVRLL240
FVGRLVRTKG  AREAIGAVAR  LTTHDVVLDI  VGDGFDRAAC  ETLVTTLGLG  ERVRFHGSRS300
RAEVEEFYRT  ADIFVFPSFR  EPGGNVVFEA  MGHHLPVVTC  DRGGPGAAVD  DSSGMRIPVE360
SPEQMVRDFG  AALELLVTDA  ALRASMGAAA  RARVERIGLW  PAKIEAVADI  YASICREPKA420
PGRST425

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help