CAZyme3D

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Entry ID

Information for CAZyme ID: AXT20356.1

Basic Information

GenBank IDAXT20356.1
FamilyGH5_42
Sequence Length504
UniProt IDA0A3A9VH71(100,100)Download
Average pLDDT?92.74
CAZy50 ID65871
CAZy50 RepNo, QKX03962.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1871037
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
Genus
SpeciesFlavobacteriaceae bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVNINKIILR  GVLLLSYVAI  IALIIFGISA  LFSYLNTGAD  RSTILHTEVK  RIDQYLPKIN60
WEPLNNEGRQ  IDSQTLSTIE  KDYLNALYVK  HIAYKSNLTT  GLDDYYTESA  RENLYNLITT120
NHSQNISIEA  TTLEHHPTLE  FFSEDGQLAV  ITDKDVIEYK  RIYKNETLVL  ETTESATYKI180
ILLLEDGFWR  IRHIVVQDVS  EHHYKINPVS  VDKLNIKGIN  YYPQETPWDM  FGHHFDAKVI240
SKDFKIIKDA  GLNTIRIFIP  YEDFGKANVS  SEKLEKLQQV  LDLAVINNIK  IVVTLFDFYG300
DYSVLNWTLN  QRHVEAIITK  FKDHQAIIAW  DIKNEPDLDF  ESRNKSNVIA  WLRNMTAFIK360
TIDQDHPITI  GWSNAKNASL  LKDDLDYVSF  HYYEDIDDLE  TTFKSLKQII  VDKPIIISEF420
GISSYKGFWK  PFGSSKKKQA  NYHEKAQDIF  SKNNIQFMSW  TLYDYQKIPK  EVVGKLPWRK480
NTQKRFGFID  ENGAKKEAFQ  FISN504

Predicted 3D structure by AlphaFold2 with pLDDT = 92.74 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_42(216-469)

MVNINKIILR  GVLLLSYVAI  IALIIFGISA  LFSYLNTGAD  RSTILHTEVK  RIDQYLPKIN60
WEPLNNEGRQ  IDSQTLSTIE  KDYLNALYVK  HIAYKSNLTT  GLDDYYTESA  RENLYNLITT120
NHSQNISIEA  TTLEHHPTLE  FFSEDGQLAV  ITDKDVIEYK  RIYKNETLVL  ETTESATYKI180
ILLLEDGFWR  IRHIVVQDVS  EHHYKINPVS  VDKLNIKGIN  YYPQETPWDM  FGHHFDAKVI240
SKDFKIIKDA  GLNTIRIFIP  YEDFGKANVS  SEKLEKLQQV  LDLAVINNIK  IVVTLFDFYG300
DYSVLNWTLN  QRHVEAIITK  FKDHQAIIAW  DIKNEPDLDF  ESRNKSNVIA  WLRNMTAFIK360
TIDQDHPITI  GWSNAKNASL  LKDDLDYVSF  HYYEDIDDLE  TTFKSLKQII  VDKPIIISEF420
GISSYKGFWK  PFGSSKKKQA  NYHEKAQDIF  SKNNIQFMSW  TLYDYQKIPK  EVVGKLPWRK480
NTQKRFGFID  ENGAKKEAFQ  FISN504

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help