CAZyme3D

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Entry ID

Information for CAZyme ID: AXR08114.1

Basic Information

GenBank IDAXR08114.1
FamilyGH3
Sequence Length840
UniProt IDA0A346NRF7(100,100)Download
Average pLDDT?91.66
CAZy50 ID10057
CAZy50 RepNo, AWL11389.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2303538
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusSalinimonas
SpeciesSalinimonas sediminis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKPLSRAVG  FATLALALAG  CQQPAETSAS  QVSQQTNNVT  VPDYWPQISF  DTANRAEVEK60
RVDVLLQDMT  LEQKVAQLMQ  PEIRDITVED  MRRYGFGSYL  NGGGSFPGGD  KQASMQDWVD120
LAQSMYEASV  DDSLDGTTIP  TMWGTDAVHG  HNNVIGATLF  PHNIGLGAMN  DAELIKRIAT180
ATAKEVRATG  IDWIFAPTVA  TARDDRWGRT  YESYSEDPEI  VGTYARAIVS  GLQGDISDGN240
IDDEHVISTV  KHFIGDGGTN  NGDDQGNNLA  DEESLFKIHG  QGYVQGLNAG  SQSVMASFNS300
WQGDKIHGNK  YLLTHVLKEK  MGFDGFVVGD  WNGHGQIEGC  TNESCPQALN  AGLDVYMVPT360
GAWKPLLENT  IAQVKSGEIS  TERLNDAVRR  VLRVKVRVGL  FDLPSPANRS  LSANADLIGA420
PEHREIAREA  VRKSLVMLKN  QNNLLPLSPN  QRVLVAGDGA  DNIGKQAGGW  SITWQGTGNQ480
NSDFPGGTSI  YQGIERVVSA  NGGSTELAVD  GTFSERPDVA  IVVFGENPYA  EGNGDISNLE540
YQRGDKQDVA  LLRSLREQGI  PVVAVFITGR  PLWVNPEINA  SDAFVVAWLP  GSEGQGVADV600
LFTKANGEVQ  YPMHGKLSFS  WPASPTQTVN  KGDGQTPLFP  YGFGLSYGEE  DPMDEALSEQ660
ASAGDVLTTH  PVFVRSIQKP  WQIVVEHKDG  QQTMNSNTLN  AKAVAIRTTD  RNVQEDALAI720
DWHDTANVSF  GANFPEDLRD  FDNDHAALIM  DVKYAQTESQ  VSLLMACGDN  CGATIPLADY780
AQSSTQWQTV  TIPTQCFSKK  GMNFAEVFTV  LELKAGADTQ  LTVSDIRLVP  NAKDLPECVH840
840

Predicted 3D structure by AlphaFold2 with pLDDT = 91.66 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(138-358)

MRKPLSRAVG  FATLALALAG  CQQPAETSAS  QVSQQTNNVT  VPDYWPQISF  DTANRAEVEK60
RVDVLLQDMT  LEQKVAQLMQ  PEIRDITVED  MRRYGFGSYL  NGGGSFPGGD  KQASMQDWVD120
LAQSMYEASV  DDSLDGTTIP  TMWGTDAVHG  HNNVIGATLF  PHNIGLGAMN  DAELIKRIAT180
ATAKEVRATG  IDWIFAPTVA  TARDDRWGRT  YESYSEDPEI  VGTYARAIVS  GLQGDISDGN240
IDDEHVISTV  KHFIGDGGTN  NGDDQGNNLA  DEESLFKIHG  QGYVQGLNAG  SQSVMASFNS300
WQGDKIHGNK  YLLTHVLKEK  MGFDGFVVGD  WNGHGQIEGC  TNESCPQALN  AGLDVYMVPT360
GAWKPLLENT  IAQVKSGEIS  TERLNDAVRR  VLRVKVRVGL  FDLPSPANRS  LSANADLIGA420
PEHREIAREA  VRKSLVMLKN  QNNLLPLSPN  QRVLVAGDGA  DNIGKQAGGW  SITWQGTGNQ480
NSDFPGGTSI  YQGIERVVSA  NGGSTELAVD  GTFSERPDVA  IVVFGENPYA  EGNGDISNLE540
YQRGDKQDVA  LLRSLREQGI  PVVAVFITGR  PLWVNPEINA  SDAFVVAWLP  GSEGQGVADV600
LFTKANGEVQ  YPMHGKLSFS  WPASPTQTVN  KGDGQTPLFP  YGFGLSYGEE  DPMDEALSEQ660
ASAGDVLTTH  PVFVRSIQKP  WQIVVEHKDG  QQTMNSNTLN  AKAVAIRTTD  RNVQEDALAI720
DWHDTANVSF  GANFPEDLRD  FDNDHAALIM  DVKYAQTESQ  VSLLMACGDN  CGATIPLADY780
AQSSTQWQTV  TIPTQCFSKK  GMNFAEVFTV  LELKAGADTQ  LTVSDIRLVP  NAKDLPECVH840
840

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help