CAZyme3D

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Entry ID

Information for CAZyme ID: AXR05848.1

Basic Information

GenBank IDAXR05848.1
FamilyGH23
Sequence Length211
UniProt IDA0A346NJZ1(100,100)Download
Average pLDDT?87.62
CAZy50 ID167953
CAZy50 RepNo, SDT86690.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2303538
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusSalinimonas
SpeciesSalinimonas sediminis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSRKFKRVCR  FLIISGLGPF  FMMGCATAPP  KDISNICEIF  YEKDDWYDAA  EQSREKWGVP60
IHVPMAMMYQ  ESSFRHNALP  PRDYVFFGLI  PWGRVSSAYG  YSQAKTVTWN  DYVRETGNSW120
ADRDDFDDAM  DFMGWFIYKA  YLINGTSKWD  AYGQYLNYHE  GWGGFKRKSY  NRKPWLKKVA180
AKVKSRSLRY  ATQLKTCEED  LQKNWFWKLF  S211

Predicted 3D structure by AlphaFold2 with pLDDT = 87.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(62-186)

MSRKFKRVCR  FLIISGLGPF  FMMGCATAPP  KDISNICEIF  YEKDDWYDAA  EQSREKWGVP60
IHVPMAMMYQ  ESSFRHNALP  PRDYVFFGLI  PWGRVSSAYG  YSQAKTVTWN  DYVRETGNSW120
ADRDDFDDAM  DFMGWFIYKA  YLINGTSKWD  AYGQYLNYHE  GWGGFKRKSY  NRKPWLKKVA180
AKVKSRSLRY  ATQLKTCEED  LQKNWFWKLF  S211

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help