CAZyme3D

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Entry ID

Information for CAZyme ID: AXP80111.1

Basic Information

GenBank IDAXP80111.1
FamilyPL10_2
Sequence Length531
UniProt IDA0A385BLY8(100,100)Download
Average pLDDT?92.28
CAZy50 ID61713
CAZy50 RepNo, QKJ30725.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2027857
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusMariniflexile
SpeciesMariniflexile sp. TRM1-10

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKPSNHIVFV  LPFLVFGLKL  FAQPKMSKEL  VSETMLKATE  FMVEDVSVNG  GYVWYYMPDF60
SRQWGEMEAY  KTMIWLQHPG  TISMGHVFLD  AYQVTQNEYY  YKAAQKAANA  IIWGQSHEGG120
WNYMIDFAGD  RSLKQWYNTI  GKNGWRLEEF  QHYYGNSTFD  DDVTTDAARF  LLRMYLEKMD180
AVYKPALDKA  LEFILKSQYP  NGGWPQRYPL  RYDFDKQGFP  DYSSFYTFND  DVIWENINFL240
MQCYLVLGQE  RFLDPIYRGM  NFYRISQASC  GAWGQQINMK  MEVASARTYE  PAAYLPSATC300
ENALLLIKFY  QLTGDKQFLE  GIPKAIKWLE  ETKLPKDKIE  GHRTHPTFVD  VKTNKPMYVH360
RKGSNVRYGT  YYVDDNDLDL  LSHYYGKGFV  NIQELKDDYE  KVLKLTVGEV  TKDSPLKPQE420
FKYKETPQSY  YDLNRYLFNF  KIDESEIVEV  VEQLDSQNRW  LSDHAFISNP  YIGDGVNTEA480
TNAYATTRVG  DETDTSPYPD  TTDQKYISTG  TYIKNMKLLV  NYMQSIEILN  K531

Predicted 3D structure by AlphaFold2 with pLDDT = 92.28 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_2(115-384)

MKPSNHIVFV  LPFLVFGLKL  FAQPKMSKEL  VSETMLKATE  FMVEDVSVNG  GYVWYYMPDF60
SRQWGEMEAY  KTMIWLQHPG  TISMGHVFLD  AYQVTQNEYY  YKAAQKAANA  IIWGQSHEGG120
WNYMIDFAGD  RSLKQWYNTI  GKNGWRLEEF  QHYYGNSTFD  DDVTTDAARF  LLRMYLEKMD180
AVYKPALDKA  LEFILKSQYP  NGGWPQRYPL  RYDFDKQGFP  DYSSFYTFND  DVIWENINFL240
MQCYLVLGQE  RFLDPIYRGM  NFYRISQASC  GAWGQQINMK  MEVASARTYE  PAAYLPSATC300
ENALLLIKFY  QLTGDKQFLE  GIPKAIKWLE  ETKLPKDKIE  GHRTHPTFVD  VKTNKPMYVH360
RKGSNVRYGT  YYVDDNDLDL  LSHYYGKGFV  NIQELKDDYE  KVLKLTVGEV  TKDSPLKPQE420
FKYKETPQSY  YDLNRYLFNF  KIDESEIVEV  VEQLDSQNRW  LSDHAFISNP  YIGDGVNTEA480
TNAYATTRVG  DETDTSPYPD  TTDQKYISTG  TYIKNMKLLV  NYMQSIEILN  K531

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help